Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01825 ATGTCTTCTACGGGGTCTTCTTACTGGTGCTACAGATGCAGCCGGTTCGTTAGGGTTTGGGCCCGAGACACCATTGTCTGTCCCGATTGCGACGGGGGATTTCTCGAAGAGGTCGAGAACCCGCCCCGATCTGCACATGCAGAGGCTAGGCGCAGACGTTTTCCTGCTGCTGCGATGTACATGCTCGGGAATCGCCCAAATTCGGATTTGAACTCGAATTTAGGGTTTCGCCGCAGCAGAAGGAACGGCAGTGATCGCTCGCCTTTCAATCCTGTTATCGTCCTCCGAGGGCCTGCTGATGGTGGTGGCGCAGAAGGTGGTGGTGGCGAGAGGGGGAGCTTCGAGCTGTTCTACGATGATGGTGCTGGTACAGGTCTCCGACCGTTGCCCGCGAGCATGTCTGATTTCTTGATGGGCTCGGGCTTTGACCGCCTACTCGATCAGCTGACACAGATCGAGATCAATGGGGTTGGGCGCTTTGAGCATCCGCCGGCATCAAAGGCGGCTGTTGAGTCCATGCCAACCATCGAGATCATCTCCAGCCATGTCGTCAGCGAATCCCATTGTGCTGTCTGCAAGGAACCCTTTGAGCTTGGCTCCGAGGCACGTGAGATGCCGTGCAAGCACATCTACCATTCGGACTGCATACTCCCTTGGCTTTCTCTCCGGAATTCTTGTCCCGTTTGCCGCCACGAATTACCTGCAGACGTGCGTGGCAGAAACTCGCCCGAATCGGATGGAGGTCAAGATGAGCAACCTCCTGTGGCAGCAGTGGCTGAAGAAGACACAGTGGGGCTTACGATATGGAGGCTCCCAGGTGGTGGATTTGCTGTTGGGAGGTTTTCTGGGGGTAGACGTAGTGGTGAACGGGAGCTCCCTGTTGTTTACACAGAGATGGACGGGGGTTTCAATAATGGCGGTGCTCCGAGGAGGATTTCATGGACATCAAGAGGAAGTAGAGCGAGACAGAGTGGTGGATTAGGCCGGGTTTTCCGCAATTTCTTCTCCTTTTTTGGGAGGCTTAGATCTTCATCTTCTCATTCTAATTCGGAATCTGCAACCACCAGCAGAAGTCGATCCAATTCAGTTTTCAATAGAGCCTCGCGGAGGCACAGCAGAGCGTGGGTCTTGGAAGATGGGAGTGGAATAGCAAGATGGTAA 1161 0.5461 MSSTGSSYWCYRCSRFVRVWARDTIVCPDCDGGFLEEVENPPRSAHAEARRRRFPAAAMYMLGNRPNSDLNSNLGFRRSRRNGSDRSPFNPVIVLRGPADGGGAEGGGGERGSFELFYDDGAGTGLRPLPASMSDFLMGSGFDRLLDQLTQIEINGVGRFEHPPASKAAVESMPTIEIISSHVVSESHCAVCKEPFELGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPADVRGRNSPESDGGQDEQPPVAAVAEEDTVGLTIWRLPGGGFAVGRFSGGRRSGERELPVVYTEMDGGFNNGGAPRRISWTSRGSRARQSGGLGRVFRNFFSFFGRLRSSSSHSNSESATTSRSRSNSVFNRASRRHSRAWVLEDGSGIARW* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01825 386 ProSiteProfiles Zinc finger RING-type profile. 189 230 IPR001841 -
Eupl01g01825 386 MobiDBLite consensus disorder prediction 342 364 - -
Eupl01g01825 386 SUPERFAMILY RING/U-box 169 236 - -
Eupl01g01825 386 SMART ring_2 189 229 IPR001841 -
Eupl01g01825 386 FunFam E3 ubiquitin-protein ligase RING1-like 151 236 - -
Eupl01g01825 386 CDD RING-H2_RNF126-like 189 230 - -
Eupl01g01825 386 Pfam Ring finger domain 188 230 IPR001841 -
Eupl01g01825 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 68 234 - -
Eupl01g01825 386 Pfam zinc-ribbon 7 37 IPR039525 GO:0061630
Eupl01g01825 386 Pfam Protein of unknown function (DUF1117) 264 369 IPR010543 -
Eupl01g01825 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 236 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01825 Eupl-Chr1 40137606 40139846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01825 128 236 C3H Transcription Factor Family AT5G01980 46.789 1.32e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01825 K11982 - nnu:104601064 588.571