Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01790 ATGGTGAATGGGCTTTTGGAGTTGCAGCTGGTCGATGCACAAGGCCTGGAGGACACTGATTTCTTTGGAAAAATGGATCCATACGTTTTGATTCAATACAAAGACCACCAGCTCAAGAGCGGCGTCGCCAAAGGGCAAGGTACTAATCCGGTATGGAATGAAAAATTCACTTTCTGGGTGCAGTATCCGGAAGCAGATGACCAGTACAAGGTCATCCTCAGAATCATGGACAAGGACACATTTTCCCACGACGACTTTGTCGGAGAAGCGACGATTTGCGTGAAGGATGTGGTGGCGTCAGGGGTGGAGAAGGGAAAGGCCGATCTACAACCATGCAAATATAATGTTATTAACGTGAACAAGCGGTCCGGTGGAGAAATTCGCGTAGGATTCACTTTCACACCAAAGATGGAAGAGAAAACGGACCAAAGCCGTCGCTAA 441 0.4785 MVNGLLELQLVDAQGLEDTDFFGKMDPYVLIQYKDHQLKSGVAKGQGTNPVWNEKFTFWVQYPEADDQYKVILRIMDKDTFSHDDFVGEATICVKDVVASGVEKGKADLQPCKYNVINVNKRSGGEIRVGFTFTPKMEEKTDQSRR* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01790 146 Pfam C2 domain 5 104 IPR000008 -
Eupl01g01790 146 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 138 IPR035892 -
Eupl01g01790 146 SMART C2_3c 5 106 IPR000008 -
Eupl01g01790 146 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Eupl01g01790 146 Gene3D C2 domain 3 136 IPR035892 -
Eupl01g01790 146 PANTHER C2 DOMAIN-CONTAINING 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01790 Eupl-Chr1 39670463 39676407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01790 4 109 C2H2 Transcription Factor Family AT4G21160 31.132 8.31e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01790 - - vvi:100259835 187.578