Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01787 ATGCGGAGGTACAGTCCACAGTACTATAGTCCTCCAAGGAGAGGATATGGAGGTCGGGGAAGAAGTCCCCCGAGGAGGGGATATGGTGGGTATGGCGGACGCAGGGAGCAGAGTAACGGGAGTCTCTTAGTTCGGAATGTTCCTCTGAATTGCAGGCCAGAAGACCTTCGAGTTCCATTTGAAAGATTTGGACCAGTAAGGGACGTGTACCTGCCAAAGGATTATTACACAGGGGAACCTAGAGGGTTTGCTTTTGTGCAGTTTGTTGACCCTTATGATGCCACGGAGGCTCAGTATCACATGAATGGCCAACTTTTTGGTGGGAGGGAGATAACTGTGGTGGTTGCTGCAGAGACCAGGAAAAGGCCCGAGGAAATGCGCACCAGAGCCAGGCCTAGAGGGCCTTCGGGCTACGGAGGACGGCGATCATCTTATTATGGACGTTCCAGGTCTCGTTCAGTGTCCCGTTCGCGCTCTCCCCGTTATCCTTCAGCTTCCAGAAGCCGATACCGCTCAAGATCCTATTCTCCTGCTCCGAGACGGCGAGATGATTACTCTGTTTCTCCAAGAAGGCATGCAGATCACTCGAGATCTCCAAGGGATCATCCGCAAGAGCGAGACAGTGGTCACATGCGAAGGTCATATTCTCCAGGCTATGGCAATGCTGAGCGTAATGAAGTTGAGAACGGCTATGTTGAAAAGTCTACATATGATGCTGAAGAAGCACGACCAGACTGGAGATCGCCCGGCCGTGCCTCGAGATCGCCTTCTGGATCGCGATCGAGGTCTGCCGACTTGTCACCCAGGCGCAGCAGATAA 819 0.5311 MRRYSPQYYSPPRRGYGGRGRSPPRRGYGGYGGRREQSNGSLLVRNVPLNCRPEDLRVPFERFGPVRDVYLPKDYYTGEPRGFAFVQFVDPYDATEAQYHMNGQLFGGREITVVVAAETRKRPEEMRTRARPRGPSGYGGRRSSYYGRSRSRSVSRSRSPRYPSASRSRYRSRSYSPAPRRRDDYSVSPRRHADHSRSPRDHPQERDSGHMRRSYSPGYGNAERNEVENGYVEKSTYDAEEARPDWRSPGRASRSPSGSRSRSADLSPRRSR* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01787 272 SMART rrm1_1 41 114 IPR000504 GO:0003723
Eupl01g01787 272 MobiDBLite consensus disorder prediction 176 212 - -
Eupl01g01787 272 SUPERFAMILY RNA-binding domain, RBD 37 147 IPR035979 GO:0003676
Eupl01g01787 272 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 34 260 - -
Eupl01g01787 272 MobiDBLite consensus disorder prediction 146 173 - -
Eupl01g01787 272 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 33 174 - -
Eupl01g01787 272 MobiDBLite consensus disorder prediction 227 248 - -
Eupl01g01787 272 MobiDBLite consensus disorder prediction 1 39 - -
Eupl01g01787 272 Gene3D - 34 155 IPR012677 -
Eupl01g01787 272 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Eupl01g01787 272 MobiDBLite consensus disorder prediction 120 272 - -
Eupl01g01787 272 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01787 Eupl-Chr1 39631774 39641330 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01787 41 129 Eukaryotic Initiation Factors Gene Family AT2G36660 29.213 2.76e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01787 K12900 - vvi:100258210 293.893