Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01786 ATGGGGAATTGTTGGACCGCTCGAATCAAGGCTGAGAGTCCATCTCACACAGGGGTGAATTCGAAATATGTGAGCAAAGATGGAGATGACCTTAGTGGTTCAAGCAGTAAGGTTTCCACCTCTTCTGTTCCTCCAACTCCTCGAAGCGAGGGTGAGATATTGCAGTCCACCAATTTAAAGAGCTTCAGCTTCAGCGAACTCAAAACCGCTACCAGGAACTTCCGCCCCGACAGTGTATTGGGAGAGGGTGGTTTTGGTTCAGTCTTTAAGGGGTGGATTGATGAACAGGCATTTACAGCGACTAAACCCGGGACTGGGATTGTCATTGCTGTGAAGAGGCTCAACCAAGAAAGTTTCCAGGGTCACAGGGAATGGTTGGCGGAAGTTAACTATCTGGGTCAGCTATACCATCCTAATCTGGTGAAGTTGATTGGGTACTGCTTGGAGGATGAGCACCGGCTACTGGTCTATGAATTCATGCCTCGTGGAAGTTTGGAGAATCATCTCTTCAGGAGGGGTTCTTACTTCCAACCACTTTCTTGGAATTTCCGCATGAAGGTTGCTCTTGGAGCTGCAAGGGGCCTTGCCTTTCTTCACAGTGCTGAAACCAGAGTTATATATCGGGACTTCAAAACTTCTAATGTCCTGCTTGATTCGAACTACAATGCAAAACTTTCTGATTTTGGATTGGCCAAGGATGGTCCAACAGGTGATAAGAGCCATGTCTCTACTAGGGTCATGGGGACCTACGGATATGCTGCTCCCGAGTATCTAGCCACAGGTCATCTAACCGCCAAGAGTGACGTATACAGCTTCGGAGTTGTTCTTCTTGAAATGTTGTCTGGGCGACGAGCAGTGGACAAGAACCGGCCATCCGGAGAACACAACCTAGTGGAATGGGCCAAACCTCACCTGAGCAACAAACGTAAAATTTTCCGTGTCCTAGACACACGTATCGAAGGCCAGTACGCTGTGGGAGGAGCACAAAAGGCAGCTAACCTTGCTCTCCAATGCCTATCCACGGAAGCAAAGTTCAGGCCAAACATGGACGAGGTTGTAACGGCATTGGAGCAGCTTCAGGATTCCAAAGAGACAACAAGAAGCACTCAAAATGAACGCAACCCAAACCATCAAAGCCAATCCAGCAGTGAACCCAAGTACCGCAGAAGAAGCGCAGATGATACTTTAAATGGAAAGGCAGCTTCTTACCCCAGGCCATCTGCATCCCCCCTTTATGCTTAG 1242 0.4855 MGNCWTARIKAESPSHTGVNSKYVSKDGDDLSGSSSKVSTSSVPPTPRSEGEILQSTNLKSFSFSELKTATRNFRPDSVLGEGGFGSVFKGWIDEQAFTATKPGTGIVIAVKRLNQESFQGHREWLAEVNYLGQLYHPNLVKLIGYCLEDEHRLLVYEFMPRGSLENHLFRRGSYFQPLSWNFRMKVALGAARGLAFLHSAETRVIYRDFKTSNVLLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAVDKNRPSGEHNLVEWAKPHLSNKRKIFRVLDTRIEGQYAVGGAQKAANLALQCLSTEAKFRPNMDEVVTALEQLQDSKETTRSTQNERNPNHQSQSSSEPKYRRRSADDTLNGKAASYPRPSASPLYA* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01786 413 ProSitePatterns Protein kinases ATP-binding region signature. 80 112 IPR017441 GO:0005524
Eupl01g01786 413 FunFam Serine/threonine-protein kinase BIK1 41 159 - -
Eupl01g01786 413 Gene3D Phosphorylase Kinase; domain 1 49 159 - -
Eupl01g01786 413 MobiDBLite consensus disorder prediction 13 51 - -
Eupl01g01786 413 Pfam Protein tyrosine and serine/threonine kinase 78 356 IPR001245 GO:0004672|GO:0006468
Eupl01g01786 413 MobiDBLite consensus disorder prediction 1 51 - -
Eupl01g01786 413 MobiDBLite consensus disorder prediction 361 382 - -
Eupl01g01786 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Eupl01g01786 413 SUPERFAMILY Protein kinase-like (PK-like) 46 356 IPR011009 -
Eupl01g01786 413 MobiDBLite consensus disorder prediction 361 413 - -
Eupl01g01786 413 CDD STKc_IRAK 80 359 - -
Eupl01g01786 413 Gene3D Transferase(Phosphotransferase) domain 1 160 385 - -
Eupl01g01786 413 ProSiteProfiles Protein kinase domain profile. 74 359 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g01786 413 FunFam Probable serine/threonine-protein kinase PBL8 160 376 - -
Eupl01g01786 413 PANTHER OS01G0588500 PROTEIN-RELATED 39 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01786 Eupl-Chr1 39619748 39623783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01786 52 383 Glycoside Hydrolase AT3G07070 48.949 2.46e-109 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Eupl01g01786 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01786 - - nnu:104602456 707.983