Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01779 ATGGCTGAGGTGAAAATCGAGCAGTGTTGTCTTGAGAATAAGCAGTCATCTGCCACTTCGAGCTCCTCTGTTTCTGAAGGCAGTCGTAGCATTGCTCTGAAGTCGCCCAGAATTTCCAGCCCTCCTACAACATCCCCATCTCATCGGAGAACCACTGGTCCTATAAGGCGAGCGAAGGGTGGTTGGACTCCACAGGAGGATGAGACATTAAGAAATGCTGTTGAAGCTTTCAAGGGAAAGTGTTGGAAGAAAATAGCTGATTTTTTTCCTGATAGATCGGAAGTGCAATGTCTGCATCGATGGCAGAAGGTTCTCAATCCAGAACTTATTAAGGGACCATGGACCCAAGAGGAAGACGATAGAATCATTGAGCTGGTATCAAAGTATGGGCCCACAAAATGGTCTGTTATAGCGAAATCCTTGCCGGGTCGCATAGGAAAACAATGTCGGGAAAGGTGGCATAATCATTTAAATCCAATGATAAAAAAAGATGCTTGGACCTTGGAGGAGGAACTTGCACTCATGAACGCCCACCGGATACATGGGAATAAATGGGCAGAAATAGCTAGGGTTTTACCTGGAAGGACTGATAACTCGATAAAGAATCATTGGAACAGTTCCTTGAGGAAAAAGTTAGATTTCTACTTGGCTACTGGGAAACTTCCGCCAGTTCCAAAAACTGGGCAAAACGGTGCCAAGGATGTATCCAGAGCATTCTATACTGGAAATATTTTTATTTGTTCTAATAAAGGGTTGGACTCGACTGCCCAAAGTTCCTCGGGAATTGCAGATTTGTGTAAATTGTTAGAAGACTGCAAGGATCGGTTGGAGTCCTCGACCCCACAATTCCTAGATGCAGATGCTTCAGCAGGTGTAGTGATAACTGGACCCACTAACTCTGATGATGGAGAATGCAAGCCACAGGCATCAAAATTAGATCTTAGCTGTAGCGAATCTGATTCAACACCAACATCGGTGAAATATAGAAGCAATTGGGAAATTGATCGAGAAAACAAGATTGCTGGAACACCGTTTCAGTTTAGGATTCCAGCCTTTGGTTCTTTGTATTATGAGCCACTACAGTTAGAATGTGGTATTCCTTTAGATTCCACTCTTTTAAATACGTCTTGCTCCATGCAACAGACATACAACTCAAATTCAGTTATGTCACCTAGCAGTTTCTTCACTCCACCTTGTCTGAAGGGTACTGGTTTGGGTGGGCAAAGCGCGGAATCTATATTAAAGAATGCTGCTAAGAGCTTCCCTAATACTCCTTCCATATTAAGAAAAAGAAAGAGGGAAGCTTATGCTACACTCCCCCCTGATAGAATTGGGCAAACAGATGAAGTGAAAGTGAAGAATAGTTTACATACTCCCAAAGAAAAAGAAAAAAATTGGAATAACCAGGAACCATCTGGATCTCTAAATGCAAGTTTGTGTGAGAGTCCTGCTTGTCATGGTAATGGCACTGCTGGGCTGTGCAACGGGAAGGCTTTTAATGCCTCTCCTCCATACCGGTTAAGGTCGAAACGAACTGCTGTTTTCAAGTCTGTGGAGAAGCAACTGCAGTTCACGTTGGACGAAGATAAGTTTGACAGTCATACCAAATCAATGAATTTGGCCATCAAGGGGAATCCTCATGTTACTGAGAATTGTTCACAAACCAAGAAGATGGGAGTGACCTAA 1686 0.4324 MAEVKIEQCCLENKQSSATSSSSVSEGSRSIALKSPRISSPPTTSPSHRRTTGPIRRAKGGWTPQEDETLRNAVEAFKGKCWKKIADFFPDRSEVQCLHRWQKVLNPELIKGPWTQEEDDRIIELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPMIKKDAWTLEEELALMNAHRIHGNKWAEIARVLPGRTDNSIKNHWNSSLRKKLDFYLATGKLPPVPKTGQNGAKDVSRAFYTGNIFICSNKGLDSTAQSSSGIADLCKLLEDCKDRLESSTPQFLDADASAGVVITGPTNSDDGECKPQASKLDLSCSESDSTPTSVKYRSNWEIDRENKIAGTPFQFRIPAFGSLYYEPLQLECGIPLDSTLLNTSCSMQQTYNSNSVMSPSSFFTPPCLKGTGLGGQSAESILKNAAKSFPNTPSILRKRKREAYATLPPDRIGQTDEVKVKNSLHTPKEKEKNWNNQEPSGSLNASLCESPACHGNGTAGLCNGKAFNASPPYRLRSKRTAVFKSVEKQLQFTLDEDKFDSHTKSMNLAIKGNPHVTENCSQTKKMGVT* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01779 561 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Eupl01g01779 561 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Eupl01g01779 561 Gene3D - 58 110 - -
Eupl01g01779 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Eupl01g01779 561 Gene3D - 111 162 - -
Eupl01g01779 561 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Eupl01g01779 561 SUPERFAMILY Homeodomain-like 56 112 IPR009057 -
Eupl01g01779 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Eupl01g01779 561 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Eupl01g01779 561 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Eupl01g01779 561 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Eupl01g01779 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Eupl01g01779 561 FunFam Transcriptional activator Myb isoform A 58 110 - -
Eupl01g01779 561 CDD SANT 113 157 IPR001005 -
Eupl01g01779 561 PANTHER MYB PROTEIN-RELATED 59 144 - -
Eupl01g01779 561 FunFam Transcriptional activator Myb isoform A 111 163 - -
Eupl01g01779 561 Gene3D - 164 230 - -
Eupl01g01779 561 MobiDBLite consensus disorder prediction 12 51 - -
Eupl01g01779 561 FunFam Transcription factor MYB3R-2 164 229 - -
Eupl01g01779 561 CDD SANT 62 105 IPR001005 -
Eupl01g01779 561 MobiDBLite consensus disorder prediction 12 65 - -
Eupl01g01779 561 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Eupl01g01779 561 CDD SANT 165 208 IPR001005 -
Eupl01g01779 561 SMART sant 58 107 IPR001005 -
Eupl01g01779 561 SMART sant 162 210 IPR001005 -
Eupl01g01779 561 SMART sant 110 159 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01779 Eupl-Chr1 39499305 39509539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01779 49 530 MYB Transcription Factor Family AT5G02320 50.000 5.86e-145 425
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl01g01779 Myb_DNA-binding 7.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01779 K09422 - ming:122087560 798.505