Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01759 ATGGGAAAGAACGATTTCCTCACGCCGAAGGCCATCGCGAACAGAATCAAGGCGAAAGGGCTCCAGAAGCTTCGATGGTACTGCCAGATGTGCCAGAAGCAATGCCGGGACGAGAACGGATTCAAGTGCCATTGCATGAGCGAGAGCCACCAGCGCCAAATGGAAGTCTTCGGCCAAAACCCTAACCGCATTGTTGATGGGTACTCTGAGGAGTTCGAGCTGTCTTTCCTCGAGCACGTGAAGCGGACCCACCGCTTCAGCCGGGTTGCTGCCACCGTTGTCTATAACGAGTACATCGCCGACCGCCACCACATCCACATGAACTCCACAGAGTGGGCAACACTCACAGAGTTTGTCAAGTACCTCGGCCGCACGGGGAAATGCAAGGTTGATGAGACACCAAAAGGTTGGTTCATGACTTACATAGACCGAGATTCTGAAACCCTTTTAAAGGAGCGCCTTAAGAACAAGCGGCTCAAAGCCGACGTCGTAGAGGAGGAGAAACAAGAGCAGGCGATCAGGAAACAGATTGAACGAGCTGAACAGTTAATGCCCATGTCAGCATTGGCAAATGGGGTGGGGCCATTCGAGTCATCTGAGCCATTGCTGCCACCTAAATCAGACCCTGGTGGCAAGATTGCATTCTCTCTTGGTTCATCTTCTAAACCCATTACCAAAGATAATGCTGAGGGCTCCTCCAAAGTGGTATTCGAAGAATTCGAAACAGTGAGGAACGAGAACAAGACTAAAACTAGTGGCAATTCAATTAAAGATGGCAGTGGTGGTAGGTCGGTTCTTGATGATATTATGAAAGAGGAGGAAAAGGTGAAGGAGCGGAGCAATAGGAAAGATTATTGGCTGTGTGAAGGAATTATCGTCAAGGTCATGAGCAAAGCGTTGGCTGAGAAGGGTTATTATAAGCAGAAGGGAGTGGTTGTTAAGGTGATAGACAAGTATGTTGGGGAAATAGAGATGCTTGACAGCAAGCATGTGCTTAGAGTTGATCAGGAAGAGCTTGAAACCGTGATTCCACAAATTGGGAGTCGTGTGAGAATAGTGAACGGGGCTTACCGTGGATCAAATGCCAGGATGATGTCCGTGGATACGGACAACTATTGCGCTAAGGTACAGATAGAGAAAGGTATATATGATGGGAGGGTGCTGCAGGCAGTCGACTATGAAGACATTTGCAAGGTTGTCCAGTAG 1206 0.4876 MGKNDFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQMEVFGQNPNRIVDGYSEEFELSFLEHVKRTHRFSRVAATVVYNEYIADRHHIHMNSTEWATLTEFVKYLGRTGKCKVDETPKGWFMTYIDRDSETLLKERLKNKRLKADVVEEEKQEQAIRKQIERAEQLMPMSALANGVGPFESSEPLLPPKSDPGGKIAFSLGSSSKPITKDNAEGSSKVVFEEFETVRNENKTKTSGNSIKDGSGGRSVLDDIMKEEEKVKERSNRKDYWLCEGIIVKVMSKALAEKGYYKQKGVVVKVIDKYVGEIEMLDSKHVLRVDQEELETVIPQIGSRVRIVNGAYRGSNARMMSVDTDNYCAKVQIEKGIYDGRVLQAVDYEDICKVVQ* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01759 401 SUPERFAMILY beta-beta-alpha zinc fingers 26 62 IPR036236 -
Eupl01g01759 401 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 1 399 IPR037321 -
Eupl01g01759 401 FunFam DNA/RNA-binding protein KIN17, putative 344 400 - -
Eupl01g01759 401 Gene3D - 290 343 - -
Eupl01g01759 401 FunFam DNA/RNA-binding protein kin17-like 290 343 - -
Eupl01g01759 401 CDD KOW_KIN17 346 399 IPR041995 -
Eupl01g01759 401 FunFam DNA/RNA-binding protein KIN17, putative 61 160 - -
Eupl01g01759 401 Gene3D - 344 400 IPR014722 -
Eupl01g01759 401 Pfam Domain of Kin17 curved DNA-binding protein 52 177 IPR019447 -
Eupl01g01759 401 SMART Kin17_mid_2 52 178 IPR019447 -
Eupl01g01759 401 Coils Coil 149 183 - -
Eupl01g01759 401 Pfam KN17 SH3-like C-terminal domain 282 335 IPR041330 -
Eupl01g01759 401 Gene3D - 60 160 IPR038254 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01759 Eupl-Chr1 39298838 39300821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01759 1 400 C2H2 Transcription Factor Family AT1G55460 69.586 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01759 K13102 - nnu:104588411 658.677