Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01750 ATGGATGATTATCATCCCAGGCGAGTCGATCTCTCTCCGATATCCATCGCCCTTATCGGGATTGTATCGGCAACCCTTGTGCTCACCATCTACCACTGCATCGCTGTAGGTTGGTGCAACCAACGCCGGAACGTTTCCGGCCCCCAACGTCGACAAGGTTTTTTGTCTGAACAAGAAGAGTCTCGAGGTAGCTTGGAGAATTCCATAATTCAACTCATTCCGTCATATAGGTACACTAAAGAGGTGGGATTGGTTGTGAGAACCGAAGACGGAACGTGTGCGGTGTGTTTGTGCGAGTTCAATGAAGGAGAAGAGGTTCGAATTTTGCCGGAGTGCATGCACTATTTTCATGTCCCTTGTATTGATATGTGGCTCTACTCCCACTCAAATTGTCCGTTATGTCGCACCGACACCATGATTTTGCCTCAACCCATGCAACCCCACCAGGCGTCAAGTGGGTTGCGGCCGGCGGATACACAAAGTTTGCCGGATTAA 495 0.497 MDDYHPRRVDLSPISIALIGIVSATLVLTIYHCIAVGWCNQRRNVSGPQRRQGFLSEQEESRGSLENSIIQLIPSYRYTKEVGLVVRTEDGTCAVCLCEFNEGEEVRILPECMHYFHVPCIDMWLYSHSNCPLCRTDTMILPQPMQPHQASSGLRPADTQSLPD* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01750 164 SUPERFAMILY RING/U-box 87 142 - -
Eupl01g01750 164 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 7 138 IPR044675 -
Eupl01g01750 164 SMART ring_2 93 134 IPR001841 -
Eupl01g01750 164 CDD RING-H2_EL5-like 93 135 - -
Eupl01g01750 164 MobiDBLite consensus disorder prediction 145 164 - -
Eupl01g01750 164 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Eupl01g01750 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 51 139 IPR013083 -
Eupl01g01750 164 Pfam Ring finger domain 92 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01750 Eupl-Chr1 39147995 39148571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01750 16 144 C3H Transcription Factor Family AT5G17600 39.568 1.86e-27 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01750 - - nnu:109114829 198.749