Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Eupl01g01740 | ATGTCTTCAGCTCAAGATCCATTTTACATTGTTAAAGAGGAGATTCAGGAGTCTATTGATAAACTGCAATCTAATTTTCACCGATGGGAAAATATCCCTTCAAATACTGGAGAAAGAGTCCATCTCACAAAGGAGCTCCTTGTCAGCTGTGAAAGCATTGAGTGGCAGGTGGATGAATTGGATAAGGCAATTGCTGTAGCAGCTAGAGATCCTGCCTGGTATGGCATCAATGAAGTGGAGCTTGAGAAACGTAGGAGATGGACCAGTACTACTCGTACTCAGGCGGGCACTGTGAGGAAAGCTGTAAATGCTGGAAAGGAGCAGAGCAACACAGTCAGCACCAGCGTAAATGGCATGCGCCAAGAGCTAATGAGGCTTCCGAATGATCGTCCTTATCAGGCAGGCAGATCCAACCCGTACGCAGCCCAAGATAATGATGATTTCATTTCATCAGAATCAGACCAGCAGCTGCTTCTCATAAAGCAACAAGATGAAGAACTGGATGAACTAAGTGCAAGCGTGGAGAGAATTGGAGGTGTTGGGCTTACTATACATGAAGAACTCATCGGACAGGAGAAGATTATACATGAATTGGGCTTGGATATGGAGAGTACTTCAAATCGTCTCGATTTTGTTCAGAAAAAGGTGGCTCTGGTTATGAAAAAGGCAGGAGTGAAGGGCCAGATTATGATGATATTGTTTTTGGTGATTTTGTTTATTGTTCTGTTTGTTTTGGTCTTCTTCACGTAG | 750 | 0.436 | MSSAQDPFYIVKEEIQESIDKLQSNFHRWENIPSNTGERVHLTKELLVSCESIEWQVDELDKAIAVAARDPAWYGINEVELEKRRRWTSTTRTQAGTVRKAVNAGKEQSNTVSTSVNGMRQELMRLPNDRPYQAGRSNPYAAQDNDDFISSESDQQLLLIKQQDEELDELSASVERIGGVGLTIHEELIGQEKIIHELGLDMESTSNRLDFVQKKVALVMKKAGVKGQIMMILFLVILFIVLFVLVFFT* | 250 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Eupl01g01740 | 249 | CDD | SNARE_NTD_AtSYP61-like | 5 | 82 | - | - | |
| Eupl01g01740 | 249 | SMART | tSNARE_6 | 152 | 219 | IPR000727 | - | |
| Eupl01g01740 | 249 | CDD | SNARE_Qc | 160 | 217 | - | - | |
| Eupl01g01740 | 249 | Pfam | Syntaxin 6, N-terminal | 6 | 97 | IPR015260 | GO:0016020|GO:0048193 | |
| Eupl01g01740 | 249 | Coils | Coil | 12 | 32 | - | - | |
| Eupl01g01740 | 249 | SUPERFAMILY | SNARE fusion complex | 155 | 219 | - | - | |
| Eupl01g01740 | 249 | FunFam | syntaxin-61 isoform X1 | 160 | 221 | - | - | |
| Eupl01g01740 | 249 | SUPERFAMILY | t-snare proteins | 5 | 102 | IPR010989 | GO:0016020|GO:0016192 | |
| Eupl01g01740 | 249 | Pfam | SNARE domain | 200 | 245 | IPR000727 | - | |
| Eupl01g01740 | 249 | FunFam | Syntaxin 10 | 3 | 105 | - | - | |
| Eupl01g01740 | 249 | Gene3D | - | 159 | 221 | - | - | |
| Eupl01g01740 | 249 | PANTHER | SYNTAXIN | 12 | 239 | IPR045242 | - | |
| Eupl01g01740 | 249 | Gene3D | - | 2 | 105 | - | - | |
| Eupl01g01740 | 249 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 157 | 219 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Eupl01g01740 | Eupl-Chr1 | 39044952 | 39055078 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Eupl01g01740 | 56 | 249 | SNARE and Associated Proteins | AT1G28490 | 64.433 | 3.78e-86 | 253 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Eupl01g01740 | K08500 | - | msin:131249214 | 379.022 |