Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01730 ATGTCTAGTGCTTTGGACATGTCTCTCGACGATCTGATCAAGAACAACAAGAGATCTGGCGGAGGAGGCGGTAGAGGCAGAGGTTCTGGTCCAGGTCCAGCTCGACGATTTCCGAATCGCGGCGCAAGTCGAACCACGCCTTACTCTATGGGAAAGCCGGTTCAGGCGCCGGATTCAACGTGGACGCACGACATGTTTGCAGATCAGGTGGCAGCATATCCGGCGAAGGGAGGTCGAGCGTCTGCGTTAGAGACGGGCTCCAAGCTCTACATTTCCAACTTAGATTATGGCGTCTCGAACGAGGACATCAAGGAACTCTTTGCAGAGGTCGGTGACCTGAAACGATATTCAATCCATTATGATAGGAGTGGAAGATCAAAGGGAACGGCAGAAGTGGTCTTTTCACGGCGGGCAGATGCTGTAGCAGCTGTCAAGAGATACAACAATGTCCAGCTCGATGGGAAGCCGATGAAAATAGAGATTGTGACTCCTGCTGCTGTGCCTCCGATTACAAATGGCATACTCGGAAATCCAAATGGCATACTCGGAAATCCAAACGGCGTTCCCAGAAGTGGACAAGGAAGGGGTGGAGCTATGGGACGACCTCGCGGTGGCGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGTGGCGGCGGCGGCGGTAACAGCAGTGGCGGACGTGGTTTTGGGAGGGGCCGTGGACGGGGGAGAGGCCGTGGTGAAAAAGTATCTGCGGAAGATCTTGATGCTGACTTGGAAAAGTACCACACAGAAGCAATGCAAATAAACTAA 801 0.5481 MSSALDMSLDDLIKNNKRSGGGGGRGRGSGPGPARRFPNRGASRTTPYSMGKPVQAPDSTWTHDMFADQVAAYPAKGGRASALETGSKLYISNLDYGVSNEDIKELFAEVGDLKRYSIHYDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVTPAAVPPITNGILGNPNGILGNPNGVPRSGQGRGGAMGRPRGGGGGGGGGGGGGGGGGGGGGNSSGGRGFGRGRGRGRGRGEKVSAEDLDADLEKYHTEAMQIN* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01730 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 89 157 IPR000504 GO:0003723
Eupl01g01730 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 87 164 IPR000504 GO:0003723
Eupl01g01730 266 SUPERFAMILY RNA-binding domain, RBD 81 195 IPR035979 GO:0003676
Eupl01g01730 266 CDD RRM_THOC4 87 161 - -
Eupl01g01730 266 MobiDBLite consensus disorder prediction 42 56 - -
Eupl01g01730 266 MobiDBLite consensus disorder prediction 182 266 - -
Eupl01g01730 266 MobiDBLite consensus disorder prediction 237 259 - -
Eupl01g01730 266 Gene3D - 71 253 IPR012677 -
Eupl01g01730 266 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 264 - -
Eupl01g01730 266 MobiDBLite consensus disorder prediction 1 60 - -
Eupl01g01730 266 Pfam C-terminal duplication domain of Friend of PRMT1 210 260 IPR025715 -
Eupl01g01730 266 SMART FoP_duplication_2 195 266 IPR025715 -
Eupl01g01730 266 SMART rrm1_1 88 160 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01730 Eupl-Chr1 38897706 38906428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01730 86 161 Eukaryotic Initiation Factors Gene Family AT2G23350 36.842 5.69e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01730 K12881 - ming:122087276 318.161