LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl01g01727	ATGGCGGCCTCTCGACGCCTTCGAGATCTGCAATCGCAACCAGGCAACAAGATCTGCGTCGACTGTTCTCAGAAAAATCCTCAATGGGCATCGGTTTCGTACGGTATCTTCATGTGCCTCGAATGCTCTGGCAAGCACCGTGGTCTCGGTGTTCACATCAGCTTCGTCCGATCCGTTACCATGGACTCCTGGTCTGAGATCCAGCTCAAGAAGATGGAATCCGGAGGAAACGAGCAGCTCAACGCGTTCCTCTCCCAATACGGAATCCCAAAAGAAACCGATATCGTCTCCAAGTACAACACAAATGCCGCCAGTGTTTACCGGGATAGAATTCAAGCTCTCGCCGAAGGGCGCCAATGGTGGGACCCAGCGGTTGTTAAGGAGACGGTGGGTATCGGGAAGAAGAAACCGCCCTTGGGGCAGAGCGGTCGAGGTGGCGGAAGTGGCCGGGATGGTAATTTGGGGAGTAATGTAGGATGGGATAGTTGGGACAATGATGATGAATTTCGATCTGCGGATATGAGGCGGAATCAATCGACGGGGGATTTCAGAGGTGGAGGTGGAGGTGGAAACGGTGGTGGTGGGAGAGGCGCGCCGATGAGATCGAGGTCGACAGAGGATATGCTTACAAGGTCGCAGTTGGAGGCATCGGCTGCAAATAAGGAGAGTTTTTTTGCGAGGAAGATGGCGGAGAATGAAACTCGACCTGATGGATTGCCGCCTTCGCAAGGGGGGAAGTACGTGGGGTTTGGATCAACGCCTCCACCTACTCAACAGAATAGTTCGCAAGGGAATGCTCTTATAGACACGGTGTCTGTTGTTTCCCAGGGATTTGGTAGATTATCTCTTGTTGCAGCATCTGCTGCTCATTCTGCGGCTACCGTAGTCCAAGCTGGTACGAAAGAGCTTACTTCCAAGGTGAGAGAGGGCAGTTATGATTACAAGGTGAACGAGACAGTGAATGTTGTCACCACTAAAACTACCGAGATTGGGCAGAAGACATGGGGGCTCATGAAAGGAGTCATGGCAATGGCTTCACAGAAGGTTGAGGAATACACCAAGGAAGGAATCAACTGGAACGGAGATAACTGGCAAAGGAATGACAGTGAGAAAAACGGGTATTATCAGGAGTTTGGGCAGGAGAACAAAGGGTGGAACTCTTCTTCTGGAGGGCACTCTTCATCAGGTAGACAGTTCAACTCCGTCAATTCTTCGAGCTCTTGGGACGAGTGGGACAGTAAAGACAACCATAAGGAAGAATCCGGGAAAGGAGCAACAGCACCGAACGGGGATAGCTGGGCAGGGTGGGATGATGCCAAGGATGATGGCTATGAGAATTTCTCCCACAGCTCGTCCAATAAGAAGGCAGCAGGTCAGAATGGGAAATCAGATACCCAGTGGACAGAGGGTGGCTTCCTGTAA	1422	0.5155	MAASRRLRDLQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQLKKMESGGNEQLNAFLSQYGIPKETDIVSKYNTNAASVYRDRIQALAEGRQWWDPAVVKETVGIGKKKPPLGQSGRGGGSGRDGNLGSNVGWDSWDNDDEFRSADMRRNQSTGDFRGGGGGGNGGGGRGAPMRSRSTEDMLTRSQLEASAANKESFFARKMAENETRPDGLPPSQGGKYVGFGSTPPPTQQNSSQGNALIDTVSVVSQGFGRLSLVAASAAHSAATVVQAGTKELTSKVREGSYDYKVNETVNVVTTKTTEIGQKTWGLMKGVMAMASQKVEEYTKEGINWNGDNWQRNDSEKNGYYQEFGQENKGWNSSSGGHSSSGRQFNSVNSSSSWDEWDSKDNHKEESGKGATAPNGDSWAGWDDAKDDGYENFSHSSSNKKAAGQNGKSDTQWTEGGFL*	474

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl01g01727	473	SUPERFAMILY	ArfGap/RecO-like zinc finger	5	110	IPR037278	-
	Eupl01g01727	473	MobiDBLite	consensus disorder prediction	132	211	-	-
	Eupl01g01727	473	SMART	arf_gap_3	1	120	IPR001164	GO:0005096
	Eupl01g01727	473	PRINTS	HIV Rev interacting protein signature	16	35	IPR001164	GO:0005096
	Eupl01g01727	473	PRINTS	HIV Rev interacting protein signature	56	77	IPR001164	GO:0005096
	Eupl01g01727	473	PRINTS	HIV Rev interacting protein signature	35	52	IPR001164	GO:0005096
	Eupl01g01727	473	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	4	120	IPR001164	GO:0005096
	Eupl01g01727	473	MobiDBLite	consensus disorder prediction	231	263	-	-
	Eupl01g01727	473	Pfam	Putative GTPase activating protein for Arf	5	106	IPR001164	GO:0005096
	Eupl01g01727	473	Gene3D	Arf GTPase activating protein	1	128	IPR038508	-
	Eupl01g01727	473	MobiDBLite	consensus disorder prediction	379	473	-	-
	Eupl01g01727	473	MobiDBLite	consensus disorder prediction	379	409	-	-
	Eupl01g01727	473	CDD	ArfGap_ArfGap1	3	117	-	-
	Eupl01g01727	473	MobiDBLite	consensus disorder prediction	449	467	-	-
	Eupl01g01727	473	MobiDBLite	consensus disorder prediction	163	177	-	-
	Eupl01g01727	473	FunFam	ADP-ribosylation factor GTPase-activating protein	1	129	-	-
	Eupl01g01727	473	MobiDBLite	consensus disorder prediction	410	424	-	-
	Eupl01g01727	473	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	1	472	IPR044519	GO:0005096\|GO:0016192

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl01g01727	Eupl-Chr1	38869731	38878636	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl01g01727	5	125	C2H2 Transcription Factor Family	AT4G05330	41.463	4.60e-23	98.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl01g01727	K12492		-	nnu:104594589	725.317