Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01718 ATGGGAACCGTTTTGGGGAGGAGGATGGAACGGCTAATCACATCGAATCAGTCGTTTTTAGCCAGAAGATTCAGCTCCCAGCTCTTTGTTAGCAGGTTATCATTCTACACCACGGATGATGAATTAAAAGAGTTATTTTCACCCTTTGGTGAAGTCACAGAAGGTAAATATTTATTTGGGCTAGTAAAGGACCAAAGAACCCAAAGGCCTAAAGGGTTTGGTTTCGTTACCTATGAGTCTGAGGTGGAAGCACAGAAGGCATTGAAGGCATTGGATGGCAGGATAGTGGGTGGAAGGCTGATCTCTGTAGAAGTTGCAAAGACCAGGAGACCTGAAGAGGAAAATGCTGCCTCCTAA 357 0.4482 MGTVLGRRMERLITSNQSFLARRFSSQLFVSRLSFYTTDDELKELFSPFGEVTEGKYLFGLVKDQRTQRPKGFGFVTYESEVEAQKALKALDGRIVGGRLISVEVAKTRRPEEENAAS* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01718 118 SUPERFAMILY RNA-binding domain, RBD 23 111 IPR035979 GO:0003676
Eupl01g01718 118 SMART rrm1_1 27 104 IPR000504 GO:0003723
Eupl01g01718 118 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 9 110 - -
Eupl01g01718 118 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 108 IPR000504 GO:0003723
Eupl01g01718 118 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 21 111 - -
Eupl01g01718 118 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 101 IPR000504 GO:0003723
Eupl01g01718 118 Gene3D - 13 117 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01718 Eupl-Chr1 38786966 38791430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01718 7 94 Eukaryotic Initiation Factors Gene Family AT4G34110 34.091 6.39e-09 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01718 K13195 - aew:130761471 138.658