Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01717 ATGAAGAGAAGCAGAGGAGAAGGAGATATAGAAAGCTTAAGAAACATGGCCAAGTGCTTGATGTTGTTGTCTCGTGGAGTTGAGACTGAGTCGATGACTCACTCAACAACTCGTGCTTTCGAGTGCAAGACCTGTAACCGGCAATTCCCATCGTTCCAAGCGCTAGGAGGTCACAGAGCGAGTCACAAGAAGCCGAGATTGATGGGAGGAGACCCAAATCATAAGATGCAGAGCACACTCTCGAAACCCAAGACGCACGAGTGTTCGATATGTGGTCTAGAGTTTGCGATCGGGCAAGCTTTGGGTGGTCACATGAGGAGGCATAGAACCGCCATGAGTGAAGCGTTGTCTTCTTCTCTTCCTCCTCCACAAGTACCTGTTCTGAAGAGATCGAACAGTAGACGGGTTTTATGTATAGACTTGAACTTGACTCCTTTGGAAGATGATGACTTTGAGTTTCGAATTGGAAGTGGGTTTCCGGAGAAGATTACTCAGCCCTTTATTAATTGTCTTATCTGA 519 0.4663 MKRSRGEGDIESLRNMAKCLMLLSRGVETESMTHSTTRAFECKTCNRQFPSFQALGGHRASHKKPRLMGGDPNHKMQSTLSKPKTHECSICGLEFAIGQALGGHMRRHRTAMSEALSSSLPPPQVPVLKRSNSRRVLCIDLNLTPLEDDDFEFRIGSGFPEKITQPFINCLI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01717 172 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Eupl01g01717 172 PANTHER ZINC FINGER PROTEIN ZAT5 12 150 - -
Eupl01g01717 172 MobiDBLite consensus disorder prediction 56 80 - -
Eupl01g01717 172 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Eupl01g01717 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
Eupl01g01717 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Eupl01g01717 172 Pfam C2H2-type zinc finger 39 65 - -
Eupl01g01717 172 Pfam C2H2-type zinc finger 86 110 - -
Eupl01g01717 172 SUPERFAMILY beta-beta-alpha zinc fingers 38 108 IPR036236 -
Eupl01g01717 172 Gene3D Classic Zinc Finger 38 108 - -
Eupl01g01717 172 SMART c2h2final6 40 62 IPR013087 -
Eupl01g01717 172 SMART c2h2final6 86 108 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01717 Eupl-Chr1 38763917 38764954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01717 5 156 C2H2 Transcription Factor Family AT2G28710 50.000 8.95e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl01g01717 zf-C2H2_6 1.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01717 - - nnu:104599286 218.009