Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01709 ATGAGAAACGCCGTGTATCCATCGTGTTCTACACAGCTTTGCAGCTTCGGATTACGATTTGCTGCTTTGAAACTGACAAGTTTTGACGATCACAGAGACGTCCACGGGAGCAGTTTTTTTCGTGAATCTCAGGTCCCGAGCGATCATCACCTCGGAAACTTTGCTCCACTCTCGACAGTAGAAGTTCCTCAAACCCTTAACTATCTCCATCTTCCAGGTTTGCTAACTAGCTCCATGTACGAGAATGCTGCCCAGCGTAATCCATTTCCAGTTCCACACTCCGAAGCTGGAATACAAAATGCGAGAAAACGGACGATTAAAGGTGACGGTGGTTCGATCAACAATGAAAAAGCCGAGCAAGAATCCAAGAAAAAGAAAGCCGCCATGTGCATGGAAAACGTCCAATGCCCTTTCCATCCTACTGAAGAACAACCTTCAGAGACCCAAGATCACAGAGCGCCGGTGAGGAGAAGTCAAAAGATAGGAGACAAAATAACAGCTCTTCAAAAGTTGGTTTCTCCTTTTGGCAAGACGGACACGGCTTCGGTGCTTCAAGAGGCTTCTGTTTGCATTAAGCTCCTTCAAGAACAGATTCAGATTTCGGGAATGAGAAACGCCGTGTATCAATCGTTTTCTTTACAGCTTTGCAGCTTCGCTGGAAACAACCAAGTTCAAATGTCCAACTCCTCCGACGTCTCTGAAAACGTGTACGGGAGCAGTTCTTTCAGAGATTATCAGGTCTCGAGCGATCACCACCTCGGAAACATTCCTCAGCTGTCGACAGTAGAAATTCCTCAGACCCTTAACTATCTCCATCGTCAAGGTTTATTAAGTAGTTCCATGTACGAGAATGCTGCCCAGCGTAACACATTTCCTGTTCCACACTCCGAAGCTGCCATAGAAAATGCGAGGAAACGGACGATGAAAGGTGACGGTGGTGGTTCGATCAACAACAGAACAGGCATGGAAGAGTCGAAGAAAAAGAAAGCCATGTGCATTGAAGACCAACGCCCTTTCCAAACTACTGAAGAGCAACCATCAAACACCCAAGAACAGAGAGCGCCGGTGAGGAGGAGCCAAAAGATAGGAGACAGAATAACAGCTCTTCAAAAGCTGGTTTCTCCCTTTGGCAAGACGGACACGGCTTCCGTGCTTCAACAGACTTGTGTTTGCATTAAGCTCCTTCAAGAACAGATTCGGATGTTGAGTGCTCCTTATTTCACAGTCAGACCTCTTCTTCCACAGGGTGTTGAAGGAAGAAAGGTGGACCTACGAGGCAGAGGACTTTGCCTGGTTCCCGTGTCGTTCAATCAGAATCCGAGTAAAGAAGACCGAGTTGATCATTCTATATCAACCATCATTCCTCCAACCTACTAA 1377 0.4662 MRNAVYPSCSTQLCSFGLRFAALKLTSFDDHRDVHGSSFFRESQVPSDHHLGNFAPLSTVEVPQTLNYLHLPGLLTSSMYENAAQRNPFPVPHSEAGIQNARKRTIKGDGGSINNEKAEQESKKKKAAMCMENVQCPFHPTEEQPSETQDHRAPVRRSQKIGDKITALQKLVSPFGKTDTASVLQEASVCIKLLQEQIQISGMRNAVYQSFSLQLCSFAGNNQVQMSNSSDVSENVYGSSSFRDYQVSSDHHLGNIPQLSTVEIPQTLNYLHRQGLLSSSMYENAAQRNTFPVPHSEAAIENARKRTMKGDGGGSINNRTGMEESKKKKAMCIEDQRPFQTTEEQPSNTQEQRAPVRRSQKIGDRITALQKLVSPFGKTDTASVLQQTCVCIKLLQEQIRMLSAPYFTVRPLLPQGVEGRKVDLRGRGLCLVPVSFNQNPSKEDRVDHSISTIIPPTY* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01709 458 MobiDBLite consensus disorder prediction 144 158 - -
Eupl01g01709 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 211 IPR036638 GO:0046983
Eupl01g01709 458 MobiDBLite consensus disorder prediction 138 158 - -
Eupl01g01709 458 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 239 437 - -
Eupl01g01709 458 SMART finulus 150 200 IPR011598 GO:0046983
Eupl01g01709 458 SMART finulus 348 401 IPR011598 GO:0046983
Eupl01g01709 458 MobiDBLite consensus disorder prediction 338 356 - -
Eupl01g01709 458 CDD bHLH_AtbHLH_like 152 200 IPR045239 -
Eupl01g01709 458 MobiDBLite consensus disorder prediction 307 360 - -
Eupl01g01709 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 145 194 IPR011598 GO:0046983
Eupl01g01709 458 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 357 412 IPR036638 GO:0046983
Eupl01g01709 458 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Eupl01g01709 458 CDD bHLH_AtbHLH_like 353 403 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01709 Eupl-Chr1 38648373 38659573 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01709 322 447 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31730 36.923 2.40e-20 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Eupl01g01709 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01709 - - msin:131253882 194.512