LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl01g01709	ATGAGAAACGCCGTGTATCCATCGTGTTCTACACAGCTTTGCAGCTTCGGATTACGATTTGCTGCTTTGAAACTGACAAGTTTTGACGATCACAGAGACGTCCACGGGAGCAGTTTTTTTCGTGAATCTCAGGTCCCGAGCGATCATCACCTCGGAAACTTTGCTCCACTCTCGACAGTAGAAGTTCCTCAAACCCTTAACTATCTCCATCTTCCAGGTTTGCTAACTAGCTCCATGTACGAGAATGCTGCCCAGCGTAATCCATTTCCAGTTCCACACTCCGAAGCTGGAATACAAAATGCGAGAAAACGGACGATTAAAGGTGACGGTGGTTCGATCAACAATGAAAAAGCCGAGCAAGAATCCAAGAAAAAGAAAGCCGCCATGTGCATGGAAAACGTCCAATGCCCTTTCCATCCTACTGAAGAACAACCTTCAGAGACCCAAGATCACAGAGCGCCGGTGAGGAGAAGTCAAAAGATAGGAGACAAAATAACAGCTCTTCAAAAGTTGGTTTCTCCTTTTGGCAAGACGGACACGGCTTCGGTGCTTCAAGAGGCTTCTGTTTGCATTAAGCTCCTTCAAGAACAGATTCAGATTTCGGGAATGAGAAACGCCGTGTATCAATCGTTTTCTTTACAGCTTTGCAGCTTCGCTGGAAACAACCAAGTTCAAATGTCCAACTCCTCCGACGTCTCTGAAAACGTGTACGGGAGCAGTTCTTTCAGAGATTATCAGGTCTCGAGCGATCACCACCTCGGAAACATTCCTCAGCTGTCGACAGTAGAAATTCCTCAGACCCTTAACTATCTCCATCGTCAAGGTTTATTAAGTAGTTCCATGTACGAGAATGCTGCCCAGCGTAACACATTTCCTGTTCCACACTCCGAAGCTGCCATAGAAAATGCGAGGAAACGGACGATGAAAGGTGACGGTGGTGGTTCGATCAACAACAGAACAGGCATGGAAGAGTCGAAGAAAAAGAAAGCCATGTGCATTGAAGACCAACGCCCTTTCCAAACTACTGAAGAGCAACCATCAAACACCCAAGAACAGAGAGCGCCGGTGAGGAGGAGCCAAAAGATAGGAGACAGAATAACAGCTCTTCAAAAGCTGGTTTCTCCCTTTGGCAAGACGGACACGGCTTCCGTGCTTCAACAGACTTGTGTTTGCATTAAGCTCCTTCAAGAACAGATTCGGATGTTGAGTGCTCCTTATTTCACAGTCAGACCTCTTCTTCCACAGGGTGTTGAAGGAAGAAAGGTGGACCTACGAGGCAGAGGACTTTGCCTGGTTCCCGTGTCGTTCAATCAGAATCCGAGTAAAGAAGACCGAGTTGATCATTCTATATCAACCATCATTCCTCCAACCTACTAA	1377	0.4662	MRNAVYPSCSTQLCSFGLRFAALKLTSFDDHRDVHGSSFFRESQVPSDHHLGNFAPLSTVEVPQTLNYLHLPGLLTSSMYENAAQRNPFPVPHSEAGIQNARKRTIKGDGGSINNEKAEQESKKKKAAMCMENVQCPFHPTEEQPSETQDHRAPVRRSQKIGDKITALQKLVSPFGKTDTASVLQEASVCIKLLQEQIQISGMRNAVYQSFSLQLCSFAGNNQVQMSNSSDVSENVYGSSSFRDYQVSSDHHLGNIPQLSTVEIPQTLNYLHRQGLLSSSMYENAAQRNTFPVPHSEAAIENARKRTMKGDGGGSINNRTGMEESKKKKAMCIEDQRPFQTTEEQPSNTQEQRAPVRRSQKIGDRITALQKLVSPFGKTDTASVLQQTCVCIKLLQEQIRMLSAPYFTVRPLLPQGVEGRKVDLRGRGLCLVPVSFNQNPSKEDRVDHSISTIIPPTY*	459

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Eupl01g01709	458	MobiDBLite	consensus disorder prediction	144	158	-	-
Eupl01g01709	458	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	156	211	IPR036638	GO:0046983
Eupl01g01709	458	MobiDBLite	consensus disorder prediction	138	158	-	-
Eupl01g01709	458	PANTHER	TRANSCRIPTION FACTOR BHLH83-RELATED	239	437	-	-
Eupl01g01709	458	SMART	finulus	150	200	IPR011598	GO:0046983
Eupl01g01709	458	SMART	finulus	348	401	IPR011598	GO:0046983
Eupl01g01709	458	MobiDBLite	consensus disorder prediction	338	356	-	-
Eupl01g01709	458	CDD	bHLH_AtbHLH_like	152	200	IPR045239	-
Eupl01g01709	458	MobiDBLite	consensus disorder prediction	307	360	-	-
Eupl01g01709	458	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	145	194	IPR011598	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl01g01709	Eupl-Chr1	38648373	38659573	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl01g01709	322	447	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G31730	36.923	2.40e-20	85.9

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Eupl01g01709		None	None	None

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl01g01709	-		-	msin:131253882	194.512

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