Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01703 ATGAAGAAGATGGTGCAAGAAGAAACACGCAAGGGTCCATGGACTGAGCAGGAGGATCTTCAACTGGTCTGCTTCGTCCGCTTATTCGGACAACAACGTTGGGATTTCATAGCCAAAGTTTCAGGTTTGAACAGAACGGGAAAAAGTTGCAGGTTACGATGGGTTAATTACCTGCACCCAGGTCTCAAACGAGGGAGGATGACACCCCAAGAAGAACGGATCGTGCTCGAACTCCATTCTCGATGGGGAAATAGGTGGTCAAGAATCGCTCGGAAATTACCCGGTCGAACCGATAACGAGATAAAGAATTATTGGAGAACCCATATGAGGAAGACGGCTCAAGAGAGGAAACAGATGAGTTTGTCATCATCACCTTCTTCGTCTTCTTCGATAGCAAAATCCCAGATTGATGAAGAAGGCAGTTTGCATGATGGAGGTTGTGAGGAAGAAGTTGCCAAAGGTTACTCCATGGATCAAATATGGAAGGAAATCGAGGTGAATACTAGTGGATGTAAAGAAGAAGGGTGCAATTTCTCTTCTTCTCCAATTGCTTCTCCTTTATGGGACTATTGCTCTGACGACTCACTGTGGAAGATGGATGAAGAAGAGAGATCAAGATGTTGCTTCCTGGCCGATCATTTTGTTTCCAAATATGAACATGGCAGAGAGTCCTAA 675 0.4489 MKKMVQEETRKGPWTEQEDLQLVCFVRLFGQQRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGRMTPQEERIVLELHSRWGNRWSRIARKLPGRTDNEIKNYWRTHMRKTAQERKQMSLSSSPSSSSSIAKSQIDEEGSLHDGGCEEEVAKGYSMDQIWKEIEVNTSGCKEEGCNFSSSPIASPLWDYCSDDSLWKMDEEERSRCCFLADHFVSKYEHGRES* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01703 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Eupl01g01703 224 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Eupl01g01703 224 MobiDBLite consensus disorder prediction 116 136 - -
Eupl01g01703 224 MobiDBLite consensus disorder prediction 115 144 - -
Eupl01g01703 224 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Eupl01g01703 224 Gene3D - 11 63 - -
Eupl01g01703 224 FunFam Myb transcription factor 11 63 - -
Eupl01g01703 224 FunFam MYB transcription factor 66 135 - -
Eupl01g01703 224 SUPERFAMILY Homeodomain-like 10 105 IPR009057 -
Eupl01g01703 224 SMART sant 10 60 IPR001005 -
Eupl01g01703 224 SMART sant 63 111 IPR001005 -
Eupl01g01703 224 Gene3D - 67 138 - -
Eupl01g01703 224 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Eupl01g01703 224 Pfam Myb-like DNA-binding domain 64 108 IPR001005 -
Eupl01g01703 224 CDD SANT 66 109 IPR001005 -
Eupl01g01703 224 CDD SANT 13 58 IPR001005 -
Eupl01g01703 224 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Eupl01g01703 224 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 122 IPR044676 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01703 Eupl-Chr1 38581980 38582860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01703 3 221 MYB Transcription Factor Family AT5G59780 58.974 3.31e-88 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl01g01703 Myb_DNA-binding 2.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01703 K09422 - vvi:100260318 305.064