Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01694 ATGAAGACGAGACTCTCTACTACCGCTACTCCTCTGCCCCCCCCATCATCCTCGTCAGCCCAAGATTTATCCAAAACCTCAAAGAGATCAAGCGGCAGCGGAGGCCTCGCCCCATCGAAATCAACGGTGTATGTTGGCAATCTGGACTACAACCTCACAAACTCCGACCTCTTCACCATATTCTCCACCTTCGGCAAGGTCGCCAAGGTCACCGTCCTTAAAGATCGCCAATCACGCCGCAGCCGTGGCATCGCCTTTGTTCTCTTCGTCTCTCAAGACGATGCCCGCAAAACCGTACAAGAGATGCAGGGCAAGGCTTTGAACAACGGACTCTAA 336 0.5327 MKTRLSTTATPLPPPSSSSAQDLSKTSKRSSGSGGLAPSKSTVYVGNLDYNLTNSDLFTIFSTFGKVAKVTVLKDRQSRRSRGIAFVLFVSQDDARKTVQEMQGKALNNGL* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01694 111 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 43 109 IPR000504 GO:0003723
Eupl01g01694 111 Gene3D - 8 110 IPR012677 -
Eupl01g01694 111 SMART rrm1_1 42 111 IPR000504 GO:0003723
Eupl01g01694 111 SUPERFAMILY RNA-binding domain, RBD 31 109 IPR035979 GO:0003676
Eupl01g01694 111 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 41 111 IPR000504 GO:0003723
Eupl01g01694 111 MobiDBLite consensus disorder prediction 1 41 - -
Eupl01g01694 111 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 19 108 IPR044598 GO:0000398|GO:0005689
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01694 Eupl-Chr1 38450900 38489886 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01694 41 109 Eukaryotic Initiation Factors Gene Family AT4G34110 34.783 1.14e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01694 K13154 - ming:122058144 146.362