Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01676 ATGGCGTCCTTACCGTACGCTCAGATCGACTGCAGCTTGCGAGCCTTGGCCGGACAAGCCGAGGGTTTCGGCCGATTTGCCATTGGAGGCCTTGACGGACCGCTCTATAACGTCACCACTTTAGCAGATGATGGGCCTGGATCACTTCGTGATGGATGTCGTAGAAAAGAAGCACTCTGGATTGTCTTTGAAGTTTCAGGAACAATTCAATTGTCATCTTATTTGAGTGTATCGTCTTATAAGACGATTGATGGACGGGGTCAAAGGATAAAACTCACAGGCAAGGGTTTACGGATGAAGGAATGTGAACATGTCATTGTATGTAATTTGGAGTTTGAAGGTGGTAAAGGACCTGATGCTGATGGAATTCAAATAAAACCCAAGTCAAGACACATATGGATAGACCGATGTAGCCTGCGTAATTATGATGATGGGCTCATCGATATCACACGAGAAAGTACAGATATTACTGTATCTAGATGTCACTTTTCACAGCATAACAAGACGATTCTGATTGGAGGGGATCCCACTCACATATCTGACAGATGCATCCGGGTGACCATTCACCATTGCTTTTTCGATGGGACCCGACAACGACACCCTCGTGTTAGATTTGGGAAGGTTCATTTATACAACAATTACACCAGAGATTGGGGCATATATGCTGTTTGTGCTAGTGTGGAATCACAGATAGTTTCTCAGTGCAATGTGTATGAAGCAGGACAGAAAAAGGTGACTTTTAAATATCTTTCGGAGAAGGCTGCAGACAAAGAAGAGGCATGTTCTGGCCGCATAAGATCTGAAGGGGACCTTTTCCTGAATGGAGCTAAAGCATGTTTAATAACAGAGAATGGTGAAGAAGGTATGTTCCATCCAAGTGAAGACTACCCAAAATGGACGATGGAAGCTTCCTCAGAGGGTCTGAAAGAGGTTCTCCAACGCTGTACAGGATGGCAGTCCATTTCAAGGCCTGCAGAGCAGACAGTTGTGGCATTAACAGCTTAA 1005 0.4478 MASLPYAQIDCSLRALAGQAEGFGRFAIGGLDGPLYNVTTLADDGPGSLRDGCRRKEALWIVFEVSGTIQLSSYLSVSSYKTIDGRGQRIKLTGKGLRMKECEHVIVCNLEFEGGKGPDADGIQIKPKSRHIWIDRCSLRNYDDGLIDITRESTDITVSRCHFSQHNKTILIGGDPTHISDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRDWGIYAVCASVESQIVSQCNVYEAGQKKVTFKYLSEKAADKEEACSGRIRSEGDLFLNGAKACLITENGEEGMFHPSEDYPKWTMEASSEGLKEVLQRCTGWQSISRPAEQTVVALTA* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01676 334 Gene3D - 7 316 IPR012334 -
Eupl01g01676 334 PANTHER PECTATE LYASE 18-RELATED 13 286 IPR045032 GO:0030570
Eupl01g01676 334 Pfam Pectate lyase 74 237 IPR002022 -
Eupl01g01676 334 SMART amb_all 46 244 IPR002022 -
Eupl01g01676 334 SUPERFAMILY Pectin lyase-like 17 319 IPR011050 -
Eupl01g01676 334 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Eupl01g01676 334 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Eupl01g01676 334 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01676 Eupl-Chr1 38274208 38277706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01676 41 329 Polysaccharide Lyase AT3G55140 77.163 9.67e-175 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01676 K01728 - nnu:104594663 600.512