Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01628 ATGGAGGACCAGAAGAACTCGAGCGAAATAATGATGGGTGCACTGTTATCCCTAACCCCCCATCAATTCTCCGATCTGACACACTCCTTGTTGTCAGATTTTCAGTTTCAACACCACCGTCGATGCTCCCTCCTCCACTCCCCCACCCGCTTCTCCCATACCCTCCAATTCCTTCAGACCCTCTCTCTCCACCAAAAAACCCTCCTAATTGCACGTTTTCTCCTAACAACATTAAAAGAACTCACACGTATCTGGGAAACCCAGACAGAAAAAAACACGGCCGGCGCTGGGCCGGGATTCGTCAGACTACGAGATGTCGACGCCATTTTACTACTCATGCTCCTCTGCGAAGTCCGGCAACAAGACTCACAAGCGTTATCGACTTCCCCGGCAGAGTGGCGCGGTGTTCTCAATGACTACGTCGTCAAAAACATGTTGAGCTTGTCGGGCATCGGAGTTTCTAGCAGTTCGGTTTTGTGTCCGTACATTGACATAGCGACGAAGTGCCGGAGGTTTCTTGATGCGACGGGTTGCGATGGTGGAAAGGCGGAGAGGGAGGTGGCGACGTCGGTAGCAGCGGTTGTGTCGTTATCTTCGGTGGAGGTGGGTGGGTTTAGTGGAGAGTGTGTGGTGTGTAAAGAGGAGATGAAGGAAGGGAGAGATGTGTGTGAATTGCCTTGTGAGCATTTATTTCATTGGGCGTGTATATTGCCTTGGTTAAAGAAGAGGAACACGTGTCCCTGTTGTAGGTTTCAGTTGCCGACCGACGATGTGTTTGGAGAGATCGAGAGGCTGTGGGGAATTTTGGTCAAGAAGAGTAGAAGGAATGTTTGCGGGGACTTGTGA 846 0.5083 MEDQKNSSEIMMGALLSLTPHQFSDLTHSLLSDFQFQHHRRCSLLHSPTRFSHTLQFLQTLSLHQKTLLIARFLLTTLKELTRIWETQTEKNTAGAGPGFVRLRDVDAILLLMLLCEVRQQDSQALSTSPAEWRGVLNDYVVKNMLSLSGIGVSSSSVLCPYIDIATKCRRFLDATGCDGGKAEREVATSVAAVVSLSSVEVGGFSGECVVCKEEMKEGRDVCELPCEHLFHWACILPWLKKRNTCPCCRFQLPTDDVFGEIERLWGILVKKSRRNVCGDL* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01628 281 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Eupl01g01628 281 PANTHER TARGET OF ERK KINASE MPK-1 31 255 - -
Eupl01g01628 281 SUPERFAMILY RING/U-box 208 256 - -
Eupl01g01628 281 CDD RING-H2_PA-TM-RING 208 250 - -
Eupl01g01628 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 256 IPR013083 -
Eupl01g01628 281 Pfam Ring finger domain 208 250 IPR001841 -
Eupl01g01628 281 SMART ring_2 209 249 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01628 Eupl-Chr1 37716260 37717642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01628 1 277 C3H Transcription Factor Family AT5G02750 42.414 1.40e-68 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01628 K11982 - nnu:104594712 342.043