Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01611 ATGAATTCGAGCTCTTCGAACCCTCAATCCATGGCGGCATCTACACCTACAGATGGCTCAGGCAAGAAAGTACGGAAACCCTACACCATTACCAAGTCAAGAGAGAGTTGGACCGAGGAAGAACATGATAAATTCCTCGAGGCTCTGCAACTGTTTGATCGTGACTGGAAGAAAATTGAGGACTTTGTTGGTTCAAAGACAGTAATCCAGATACGGAGTCATGCCCAGAAATACTTTTTGAAGGTTCAAAAGAATGGTACAATAGCTCATGTGCCCCCACCTCGCCCCAAGCGCAAAGCTGCTCATCCTTACCCACAGAAGGCATCCAAAAATGCTTTAGTTCCAATGCAAGCATCCATGGCTTATCCTTCCATATTGAGTTGCCTTGCACCTGGATATTCCTCATGGGATGACACATCTGTGCTTATAAATACTGCATCAAGTGGAAACGTGCCCTCCCAAGATGAATACACCAATCTTCATGGAGTTGAAGGTGATATTGAGTCGATTGGGGAAGCAAGGATGGGCAACGGCAGCTTTGGTGCCATTGAAAGCTCAAATAGAACATTGCTCAGTTGTGACATACCAAAGCAAGGGAAGCAAGATTGTCTACTTCACGGCATACCCGACTTTGCTGAAGTATATAGCTTCATTGGGAGTGTCTTCGATCCAGACACTAAAGGTCATGTGCAGAAGCTCAAAGAGATGGATCCCATTAATTTTGAAACTGTGTCGTTATTGATGAGAAACCTCACTATCAACTTATCTAGCCCTGATTTTGAGCCGATTAGGAAGGTTCTATCATCATATGACGTGAACACCAAAGCAGTAGGAGGTCCAGCAGGAGCTGTTGTTACAGACCAGAACAATGACCTTTTACCATGTTGA 888 0.4459 MNSSSSNPQSMAASTPTDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTIAHVPPPRPKRKAAHPYPQKASKNALVPMQASMAYPSILSCLAPGYSSWDDTSVLINTASSGNVPSQDEYTNLHGVEGDIESIGEARMGNGSFGAIESSNRTLLSCDIPKQGKQDCLLHGIPDFAEVYSFIGSVFDPDTKGHVQKLKEMDPINFETVSLLMRNLTINLSSPDFEPIRKVLSSYDVNTKAVGGPAGAVVTDQNNDLLPC* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01611 295 SMART sant 33 81 IPR001005 -
Eupl01g01611 295 MobiDBLite consensus disorder prediction 1 17 - -
Eupl01g01611 295 PANTHER SWI/SNF COMPLEX-RELATED 12 256 - -
Eupl01g01611 295 Pfam Myb-like DNA-binding domain 34 79 IPR001005 -
Eupl01g01611 295 ProSiteProfiles SANT domain profile. 32 85 IPR017884 -
Eupl01g01611 295 CDD SANT 36 79 IPR001005 -
Eupl01g01611 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 83 IPR017930 -
Eupl01g01611 295 MobiDBLite consensus disorder prediction 1 36 - -
Eupl01g01611 295 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Eupl01g01611 295 Gene3D - 37 84 - -
Eupl01g01611 295 FunFam protein REVEILLE 6 isoform X1 36 84 - -
Eupl01g01611 295 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 81 IPR006447 GO:0003677
Eupl01g01611 295 ProSiteProfiles Myb-like domain profile. 29 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01611 Eupl-Chr1 37366296 37374773 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Eupl01g01611 Myb_DNA-binding 4.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01611 - - nnu:104599340 469.929