Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01609 ATGTTGGATCTCAATGTTTTATCGGCCGATTCGACCTGCAACGAAGACGATATTATGATGGAGAAGCTTCCAGAAGGTTCAGGAGGCCAAATGGACGATTCTGGAACTTCGAATTCCTCCGTCGTCAATGCCGAAGCGTCGAGCAATGGCGGCGACGAGGACTCCTGCTCCACTCACACCAATCGCAGTGGTCGCGATCTCTTCGCCTTCAACTTCGATATCCTTAAAAAGGATGGTGTAACTGGTGTTGCCTTCGACGAAGAGGTTGAAGAGAACGGGAATCCGACTCTGCGGCAGTCGGGTTTCGTTACTCATCAGCTCTTCCCGGTGAGTGGAGGAGGCGGAGAGGCTGGTGACGATGGAGGGTTCCGCTCGGGGTCGTCTTCGGCTTCTTCGTCGCGGCCGCATTGGGTGGATCTCTCGTTCTGCCAGGTAGACGCAGCTCAGCCTGAGGTGAAGGTCTTACAGCCACAACAACCGCAGCAGGTGAAGAAGAGTCGACGGGGACCGAGGTCTAGAAGCTCTCAGTATCGTGGAGTCACATTTTATCGGAGAACAGGGAGATGGGAATCGCATATCTGGGATTGTGGGAAACAAGTGTACTTAGGGGGATTTGACACTGCTCATGCTGCGGCCAGAGCATATGATCGAGCTGCGATTAAGTTCCGGGGAGTTGATGCGGACATTAATTTTAATCTCAGCGACTATGATGAAGATCTGAAACAGATGAGGAACCTGACCAAGGAAGAATTCGTGCACATCCTCCGTCGCCAGAGCACTGGATTCTCAAGGGGGAGCTCGAAATACAGAGGGGTTACGCTCCACAAATGTGGTCGATGGGAAGCTCGTATGGGACAGTTTCTCGGCAAGAAGTATATATATCTTGGGCTCTTCGACAGTGAAGTAGAAGCTGCAAGGGCTTATGACAAGGCGGCTATCAAATGTAATGGAAGGGAAGCAGTCACTAACTTTGAGCTGAGTACATATGAGGGGGAGATACTTTCTGTGGCCGATAATGGAGGCACTGACCACAGTCTTGACCTGAACTTGGGGATTTCTTCTTCTTTTGCCGATGGCCCAAAGGGTAACGACAGTGTAGGGGGTTTCCCTTTCCATTGCAGCCCTGTTGATGTGCCCGATGCTAGGAGAGCAAGGATGGAGAATCCTGCTTCATCAACGGTGGGTGGACTCCCCCATGGCATAGCAATGGCATCTGAGCACCCTCCCATCTGGACCAATGTATATCCCAGTTTCTTTCCCAATTATGAGGAAAGAGCGATAGAGAAGAGGGTCGAAGTAGGTTCGCCAGGACTCTCGAACTGGACATGGCAAGTGCATGGCCACGGCGGCGGCGCTAACCCAATGCCACTATTCTCTACTGCAGCATCATCAGGATTCTCTTCTTCGACTACCACTGCTTCATCAGCTGCCCTTCCTCCACCACACCCGCCAAACACAACCACTACGCAGCATCGCCATTACCCTCCGTCCAACGGCCCGAACACTTCCCAGTACTACTTTTACAGGAGCTGA 1533 0.5212 MLDLNVLSADSTCNEDDIMMEKLPEGSGGQMDDSGTSNSSVVNAEASSNGGDEDSCSTHTNRSGRDLFAFNFDILKKDGVTGVAFDEEVEENGNPTLRQSGFVTHQLFPVSGGGGEAGDDGGFRSGSSSASSSRPHWVDLSFCQVDAAQPEVKVLQPQQPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYDEDLKQMRNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFELSTYEGEILSVADNGGTDHSLDLNLGISSSFADGPKGNDSVGGFPFHCSPVDVPDARRARMENPASSTVGGLPHGIAMASEHPPIWTNVYPSFFPNYEERAIEKRVEVGSPGLSNWTWQVHGHGGGANPMPLFSTAASSGFSSSTTTASSAALPPPHPPNTTTTQHRHYPPSNGPNTSQYYFYRS* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01609 510 MobiDBLite consensus disorder prediction 155 177 - -
Eupl01g01609 510 MobiDBLite consensus disorder prediction 110 134 - -
Eupl01g01609 510 Gene3D AP2/ERF domain 267 327 IPR036955 GO:0003700|GO:0006355
Eupl01g01609 510 Gene3D AP2/ERF domain 175 234 IPR036955 GO:0003700|GO:0006355
Eupl01g01609 510 Pfam AP2 domain 267 317 IPR001471 GO:0003700|GO:0006355
Eupl01g01609 510 Pfam AP2 domain 176 224 IPR001471 GO:0003700|GO:0006355
Eupl01g01609 510 SUPERFAMILY DNA-binding domain 175 233 IPR016177 GO:0003677
Eupl01g01609 510 FunFam AP2-like ethylene-responsive transcription factor 267 327 - -
Eupl01g01609 510 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 104 357 - -
Eupl01g01609 510 CDD AP2 176 234 IPR001471 GO:0003700|GO:0006355
Eupl01g01609 510 CDD AP2 267 327 IPR001471 GO:0003700|GO:0006355
Eupl01g01609 510 SMART rav1_2 268 331 IPR001471 GO:0003700|GO:0006355
Eupl01g01609 510 SMART rav1_2 176 238 IPR001471 GO:0003700|GO:0006355
Eupl01g01609 510 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Eupl01g01609 510 FunFam AP2-like ethylene-responsive transcription factor 175 234 - -
Eupl01g01609 510 MobiDBLite consensus disorder prediction 457 476 - -
Eupl01g01609 510 PRINTS Ethylene responsive element binding protein signature 269 280 IPR001471 GO:0003700|GO:0006355
Eupl01g01609 510 PRINTS Ethylene responsive element binding protein signature 307 327 IPR001471 GO:0003700|GO:0006355
Eupl01g01609 510 MobiDBLite consensus disorder prediction 21 60 - -
Eupl01g01609 510 MobiDBLite consensus disorder prediction 454 502 - -
Eupl01g01609 510 ProSiteProfiles AP2/ERF domain profile. 268 325 IPR001471 GO:0003700|GO:0006355
Eupl01g01609 510 MobiDBLite consensus disorder prediction 487 502 - -
Eupl01g01609 510 MobiDBLite consensus disorder prediction 30 60 - -
Eupl01g01609 510 ProSiteProfiles AP2/ERF domain profile. 176 232 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01609 Eupl-Chr1 37315880 37320338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01609 102 355 AP2-EREBP Transcription Factor Family AT4G36920 69.776 9.80e-105 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Eupl01g01609 AP2 3.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01609 K09284 - nnu:104594736 681.404