Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01601 ATGACGATGAGCAATAATATCGGGCAGTTCGGAGATACAACGCTAACTAAAGTGTTCGTAGGTGGGCTAGCATGGGAGACTCAGAAGGAAGCGATGAGGGAGCACTTTGAGAAGTACGGTGAAATCCTGGAGGCTGTGATCATCTCTGATAAGATCACCGGTAGATCCAAGGGTTATGGATTTGTAACGTTTAAGGAGGCAGAAGCGGCGAAGAAGGCGTGCGAGGACGCGACTCCGGTGATCAACGGACGCCGAGCCAACTGCAATCTGGCTTCGCTTGGGGCGCGTCGTCCAAGGTCGTCGTCGACAACTCCTCTTCAAGGATCAAACGTTGGACCGAGATCCACGTCATCAGCACCAACGAACCAGGTGCAGTGGTACTATCCGACAGGGACACCGGCTTCTCCCTTCCAACATCATCACGCCGTTCCCTTCCATGGCTATGGGTACTCCCCAACCTACATTGCTACTGATATGAGTTACAACCCGAAGCTAAGTTACTCTGGTGGGTCCTACGTGAACGGGCACTTCTCTCAGGTGTATCCGGGACAGGGTATGGTGAATGGAAACACGATGATGCCGGTCTACCCGTTTTATCAGATCCATCAATCGCAGACGATGGGAGTTCCTGCTCACATCTATCCACCAACAACGGCGGGACCCATCACCACCGTCCCAGCTCTCATCTCCAAGCCTCCTGCAATGGCTCCTAACACAGGTAGAGGGACGGAGGTGAAAGTTTAA 744 0.5296 MTMSNNIGQFGDTTLTKVFVGGLAWETQKEAMREHFEKYGEILEAVIISDKITGRSKGYGFVTFKEAEAAKKACEDATPVINGRRANCNLASLGARRPRSSSTTPLQGSNVGPRSTSSAPTNQVQWYYPTGTPASPFQHHHAVPFHGYGYSPTYIATDMSYNPKLSYSGGSYVNGHFSQVYPGQGMVNGNTMMPVYPFYQIHQSQTMGVPAHIYPPTTAGPITTVPALISKPPAMAPNTGRGTEVKV* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01601 247 Gene3D - 10 97 IPR012677 -
Eupl01g01601 247 FunFam Putative RNA-binding protein ARP1 10 99 - -
Eupl01g01601 247 SMART rrm1_1 17 89 IPR000504 GO:0003723
Eupl01g01601 247 MobiDBLite consensus disorder prediction 92 125 - -
Eupl01g01601 247 PANTHER BOULE-RELATED 7 220 - -
Eupl01g01601 247 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Eupl01g01601 247 MobiDBLite consensus disorder prediction 94 125 - -
Eupl01g01601 247 SUPERFAMILY RNA-binding domain, RBD 15 103 IPR035979 GO:0003676
Eupl01g01601 247 CDD RRM_RBM24_RBM38_like 16 91 - -
Eupl01g01601 247 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01601 Eupl-Chr1 37158569 37161355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01601 12 92 C2H2 Transcription Factor Family AT2G19380 43.210 2.46e-15 73.2