Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01588 ATGGCGGCCAGAGATCAAGATTCCGAGCTCGACTTGGCCTTTCGATTGCAGATGCAGGAAGCCATGGTTGCATCTCTCGCTCTTCAACTCTCCACTTCGTCTTCGACCTCTGAACCATCTCCTCCTTTAATGGAAGACACAATCGCGAACCTTCGAACCCTAGAGCTCGATAAAATCCGACAAGAACGAAAGGATCGCGAGCAATGTGAAACCGAGATGCGCAGAATCTCCGACGATCTCAAGCGTCGGATTCACGATCAGAAGTTTGCACGGGAGATTCTTCAGATCCCCGAAGAAGATTGGCAAGAATACGGAGACAATTACGAGAAGCCGTTTGGTGAGGGTTGCTCTTCTGCTCCGGTGAGCGACGAGCCTTTCAAATTGTACTTCAAGGGTTTGGTTAGTGATGAGGGAGTTAGGGATTCGAAGGTCACGTTTTCGTTATCTGCCATCGGCGTAGCAATTTGCGATCCTTGGGATAATTTGATTTTAAAGGTACAGAAACCGTTAGGTGATGAGAAGAGTCATCGGGTCGTAGAGGTGAAAGCTTTGATCGAAGGTCTCAAAGCCGCTCTTTCGTTAAATATAAAGAGAATCGACTTCTTTTGCGATTACTTCCCGCTGTACCAACATATTACAGGGAGATGGCAGGTGAAGCAGCGCAAAATTGCAACATTAGTCGATCAAGTGTTACTTCTTGGGAGAAAATTTGAGAGTTGCCGACCTTTCTTACTAGCAAGAAATGATGTTAAGTTTGCATTTAAACTGGCAAGGGATGCAATAGATTCTCAGATCAGAAGGTCCGTGGAATCTAGCCATGCTAAGAATTTGAATGAGACTTGCACCATCTGTTTGGAAGACACTAATATTAGCCAAATGTTTGTTGTTGATGGTTGCTTGCACCGCTATTGCTTTTCTTGTATGAAACAACACGTGGAAGTGAAGTTACTTCATGGGATGGTGCCTGGATGCCCTCATGAAGGTTGTAGTACTCAACTGAATGTAGATAGTTCTAAAAAATTCTTGTCCACTAAGTTTGTTGAGATGATGACCCAACGTCTAAAGGAGGATTCAATTCCTGTAACAGAGAAACTTTATTGCCCATACCCAAAGTGCTCTGTGTTAATGACAAAAAGTGAGGTTCTAGAGTATGCTAATAATTTATTTATTGGTGCTGATCGATCTGGAGTCAGGAAATGTATCAAATGCCATGGCCTTTTCTGTAGCAATTGCAACGTCCCGTGGCATCGTAACATGACCTGTCATGATTATAAAAGGTTAAATCCTTATCCCCATGCAGAAGATGCAAAGCTGAAGTCTCTTGCAACACAAAAGCTGTGGCGCCAATGCGTGAAGTGCAACCATATGATTGAACTGGCTGAAGGTTGCTACCACATGACTTGCAGGTGTGGTTATGAGTTCTGCTATACCTGTGGAGCCGAATGGAGAGACAAGAAAGCAACATGTTCCTGTGTACTTTGGGATGAAGATAATATTTTGTATGATGATGATGATGACGTAGAATTTTATGACGAAGACGAAGACGATTATGAAGACATGTACGAGTCTGATGAATACTGGGACGAACAGACAATCTACTGGTCCACATAG 1611 0.4351 MAARDQDSELDLAFRLQMQEAMVASLALQLSTSSSTSEPSPPLMEDTIANLRTLELDKIRQERKDREQCETEMRRISDDLKRRIHDQKFAREILQIPEEDWQEYGDNYEKPFGEGCSSAPVSDEPFKLYFKGLVSDEGVRDSKVTFSLSAIGVAICDPWDNLILKVQKPLGDEKSHRVVEVKALIEGLKAALSLNIKRIDFFCDYFPLYQHITGRWQVKQRKIATLVDQVLLLGRKFESCRPFLLARNDVKFAFKLARDAIDSQIRRSVESSHAKNLNETCTICLEDTNISQMFVVDGCLHRYCFSCMKQHVEVKLLHGMVPGCPHEGCSTQLNVDSSKKFLSTKFVEMMTQRLKEDSIPVTEKLYCPYPKCSVLMTKSEVLEYANNLFIGADRSGVRKCIKCHGLFCSNCNVPWHRNMTCHDYKRLNPYPHAEDAKLKSLATQKLWRQCVKCNHMIELAEGCYHMTCRCGYEFCYTCGAEWRDKKATCSCVLWDEDNILYDDDDDVEFYDEDEDDYEDMYESDEYWDEQTIYWST* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01588 536 ProSitePatterns Zinc finger RING-type signature. 299 308 IPR017907 -
Eupl01g01588 536 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 168 491 IPR031127 GO:0004842|GO:0016567
Eupl01g01588 536 CDD BRcat_RBR_unk 361 424 - -
Eupl01g01588 536 FunFam RBR-type E3 ubiquitin transferase 419 532 - -
Eupl01g01588 536 Gene3D - 419 531 - -
Eupl01g01588 536 Pfam Reverse transcriptase-like 147 260 IPR002156 GO:0003676|GO:0004523
Eupl01g01588 536 Coils Coil 44 79 - -
Eupl01g01588 536 Pfam IBR domain, a half RING-finger domain 363 421 IPR002867 GO:0008270
Eupl01g01588 536 Pfam IBR domain, a half RING-finger domain 436 489 IPR002867 GO:0008270
Eupl01g01588 536 FunFam RBR-type E3 ubiquitin transferase 276 361 - -
Eupl01g01588 536 SUPERFAMILY RING/U-box 279 360 - -
Eupl01g01588 536 Gene3D - 127 269 IPR036397 GO:0003676
Eupl01g01588 536 SMART ibrneu5 434 491 IPR002867 GO:0008270
Eupl01g01588 536 SMART ibrneu5 348 421 IPR002867 GO:0008270
Eupl01g01588 536 FunFam RBR-type E3 ubiquitin transferase 126 264 - -
Eupl01g01588 536 SUPERFAMILY RING/U-box 436 498 - -
Eupl01g01588 536 CDD Rcat_RBR_unk 447 482 - -
Eupl01g01588 536 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 360 IPR013083 -
Eupl01g01588 536 ProSiteProfiles TRIAD supradomain profile. 277 495 IPR044066 -
Eupl01g01588 536 ProSiteProfiles Zinc finger RING-type profile. 281 325 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01588 Eupl-Chr1 36956590 36964161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01588 126 480 C3H Transcription Factor Family AT2G19610 34.626 1.66e-69 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01588 - - nnu:104594769 739.954