Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01559 ATGGAAATTGATCTGAACCATGCAGTGAAAGAGGGGGAAAAGAGTGCATGTTGTTATGGAGATTGTTACAAGGGTGGTGGTTGTGGTGGTTCTTTGTCTTCTTCATCTTCTTCATCTTGTTGTTCTTCAACTTCTTCTGTGTCTTCTTCAATTTATTTTGAGCTGTGGCATGCTTGTGCTGGCCCTCTTACCTCCCTCCCCAAGAAAGGGAGTGTGGTTGTCTATTTCCCACAAGGTCACGTGGAGCAGGCTGCTTCCTCCTCATCCTCACCTTTTCCATGCTTAAAGATGCCTACCTTTGATCTCCAACCCCAGATCTTCTGCAGGGTTGTTAATGTCCAACTACTTGCTAATAAGGAGAATGATGAGGTCTATACACAGGTGACCCTCTTCCCTCAACCAGAGTTGGGGGAGAGGGATTTAGATGGTGAAGGGCATGAGGAGGACGTGGGGATGGAGGAGGAGGGTGGTGGAGGTTTGCGGAGCAATTCGACACCCCACATGTTCTGTAAAACACTTACTGCCTCCGATACTAGCACCCATGGCGGGTTTTCTGTTCCTCGAAGAGCTGCAGAAGACTGTTTCCCACGCTTAGATTATAAACAGCAAAGGCCCTCTCAGGAGCTCATTGCCAAGGACCTGCATGGAGTGGAATGGAGGTTTCGCCATATTTACAGAGGTCAGCCACGCCGGCATCTGCTTACTACAGGATGGAGTATTTTCGTAAGTCAAAAGAATCTTGTTTCTGGGGATGCAGTGCTCTTTTTGAGGGGTGATGATGGAGAACTGAGGTTGGGAGTTAGAAGAGCTGGTCGACCTAGAAACAGTCTTCCTAATTCAATTCCTGGCTCCCAGAATATGCATCACAACATTCTTTCTCCGGTGGCTAATGCAATATCCACCAAAAGCATGTTTCATGTTTTCTGCAGCCCAAGGGGAAGTTCTGCAGAGTTTGTCATACCCTACAAACAATATGTGAAAAGCATCGCTTATCCAGTAGCTATAGGAATGAGATTCAAAATGAGATATGAAATGGAAGATACAGCAGAGAAAAGGTGCAGTGGTTTAGTAACTGGGGTAGGCGATCTTGATCCCTATAGATGGCCTGATTCAAAATGGAGATGTTTGATGGTCAGGTGGGATGAAGATGTTGCAAGTGATCATCAAGAACGAGTTTCTCCATGGGAGATCGAGCCTTCCATGTCTTTACCAGCTTTAAGCATCTCATCTGCCCCAAGGCTGAAGAAACTACGGACAGATCTGCAGTCAACCTCACCCGAAAACCCTGTCACCGCAGGAGGGGGTGGGTTCTTGGACTTTGATGAATCTGTGAGATCCTCCAAGGTCTTGCAAGGTCAAGAAATAGTTGATCTTAGATCACCTCACTATGGTGGTGATAAGGTTAACCACCCAGTGGATTTTGTGATGCACAATCCAGTATGCAGAAGTCTCTCATCAACTGGGTTTAAAGAGACTGGCATTAGTGACCCTATGCGGGCGCTGCCTAACACACACACGGGATTTGCGGAATCTGAGAGATTCCAGAAGGTCTTGCATGGTCAAGAAGTATTCCATTTGAGATCCCTGCATGGAAGGCCCGAGTTCAACCATATTTCTTGGGGAAATAGTGATCTTGGTTGCAACACGTTCAACATGTACCAGAGACCCAACCTCAAGTTCTACCCTTTTGCTTTGGATGACATTGGAACCACATGCATGCCTTTTAGCGATAAATACAAACCAAACCCTGATCCTGTACTGCAATCATATATGACCAATTTCCAGAGAGGAAGTGTCCCATCTAAGATGTCTTCTATCCAAAGAAGGCTTCCTGCTATTACTAGGGATGAAGTATGCAACCCAAGTCCACACAATTCCGTGAAAGAGCTGAGGCCACCCGATAATTTATCTGCTCCAGCTACTATAGACAGAGATCCTAAAAATCATAAAGACGACGCTCGGGATGAAACTAAAACCGGTTGTAAACTGTTTGGATTCTCCTTGACCGGAGAGATTCCATTTCCAAACTCGCAGAGCTCTAGTAAGAGGAGTTGTACCAAGGTTCACAAACAAGGAAACTTGGTGGGAAGAGCTGTTGATCTCTCGAGACTGAATGGCTATGATGATCTGCTGAGTGAACTAGAGCGGCTATTTAACATGGAAGGCCTTTTGCGCGATCCCGAGAAAGGATGGCAGGTTGTTTACATGGACAGCGAGAACGATATGATGGTCGTCGGGGATGATCCTTGGCATGAGTTCTGTGATATTGTGTCCAAGATCCATATATATACGCAAGAGGAAGTGGAGAAGATGACCGTTGGGCTGATTAGTGATGACACTCAAAGTTGTTTGGAAGAAGCACCTGCAGTAATGGATGTGTCAAAATCTTCTTCATTGGGCCAGTTGGATTCTTCTCCAACGATATTTAGGATTTGA 2436 0.4585 MEIDLNHAVKEGEKSACCYGDCYKGGGCGGSLSSSSSSSCCSSTSSVSSSIYFELWHACAGPLTSLPKKGSVVVYFPQGHVEQAASSSSSPFPCLKMPTFDLQPQIFCRVVNVQLLANKENDEVYTQVTLFPQPELGERDLDGEGHEEDVGMEEEGGGGLRSNSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPRLDYKQQRPSQELIAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGDDGELRLGVRRAGRPRNSLPNSIPGSQNMHHNILSPVANAISTKSMFHVFCSPRGSSAEFVIPYKQYVKSIAYPVAIGMRFKMRYEMEDTAEKRCSGLVTGVGDLDPYRWPDSKWRCLMVRWDEDVASDHQERVSPWEIEPSMSLPALSISSAPRLKKLRTDLQSTSPENPVTAGGGGFLDFDESVRSSKVLQGQEIVDLRSPHYGGDKVNHPVDFVMHNPVCRSLSSTGFKETGISDPMRALPNTHTGFAESERFQKVLHGQEVFHLRSLHGRPEFNHISWGNSDLGCNTFNMYQRPNLKFYPFALDDIGTTCMPFSDKYKPNPDPVLQSYMTNFQRGSVPSKMSSIQRRLPAITRDEVCNPSPHNSVKELRPPDNLSAPATIDRDPKNHKDDARDETKTGCKLFGFSLTGEIPFPNSQSSSKRSCTKVHKQGNLVGRAVDLSRLNGYDDLLSELERLFNMEGLLRDPEKGWQVVYMDSENDMMVVGDDPWHEFCDIVSKIHIYTQEEVEKMTVGLISDDTQSCLEEAPAVMDVSKSSSLGQLDSSPTIFRI* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01559 811 CDD B3_DNA 167 269 IPR003340 GO:0003677
Eupl01g01559 811 SUPERFAMILY DNA-binding pseudobarrel domain 161 290 IPR015300 -
Eupl01g01559 811 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 772 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl01g01559 811 FunFam Auxin response factor 167 271 - -
Eupl01g01559 811 SUPERFAMILY CAD & PB1 domains 684 762 - -
Eupl01g01559 811 ProSiteProfiles PB1 domain profile. 683 767 IPR000270 GO:0005515
Eupl01g01559 811 SMART B3_2 169 271 IPR003340 GO:0003677
Eupl01g01559 811 FunFam Auxin response factor 678 772 - -
Eupl01g01559 811 Pfam B3 DNA binding domain 169 270 IPR003340 GO:0003677
Eupl01g01559 811 MobiDBLite consensus disorder prediction 135 163 - -
Eupl01g01559 811 Gene3D - 167 270 IPR015300 -
Eupl01g01559 811 Pfam AUX/IAA family 680 768 IPR033389 -
Eupl01g01559 811 ProSiteProfiles B3 DNA-binding domain profile. 169 271 IPR003340 GO:0003677
Eupl01g01559 811 Pfam Auxin response factor 295 376 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Eupl01g01559 811 MobiDBLite consensus disorder prediction 616 656 - -
Eupl01g01559 811 FunFam Auxin response factor 332 404 - -
Eupl01g01559 811 Gene3D - 678 772 - -
Eupl01g01559 811 Gene3D - 333 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01559 Eupl-Chr1 36607224 36630143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01559 48 811 B3 DNA Binding Superfamily AT5G60450 59.792 0.0 826
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl01g01559 AUX_IAA 4.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01559 - - ming:122081922 1117.06