Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01550 ATGGAAAATATGTCTGTTGCGGGAGTACATTTTGCCTCTCACTGGAATTCAGCAGTAGGGTCAAATGAGTATTCTTCATCAAGTATCAGCATGGAATTACCACATTATCCATTGACTACATCAGGCCCATCTTATGATCCCTTTCTGCACCCATCAGCTGCCGGAAACTTCTGCCCAGTCCCACAAAATTATGCTGACCGTCCTTCATCTTCTAGTTATTACAGACATGTAAATCCTGGAGTTGAAGGCAGCATTGTTAATCCTACAATGGAGAATGGGAGAGGGCCGTGCAAAAGAAAAAGCCCAGCGATTTCTGTTGGCTGTGACAGAGGAAGTTCCAGCAGACACTATATTGCTGGAAATTCCTCTGATCTCTCTATTTCTTCTGATTTACGGCCGGAGAAGCCAACTTCAGGTTCTCAACATTGGCCTTGGGATCCCATGGGTATAACCCCTAGTTATAGAGGGAGCAGTCTCTCAATTGCAGAAGGTTCTCAAAGGAATGTTAGAAGCCGCTCCACACTCGACTTGGAAGCTAACCTAGCTAGGACCCATTTATCAAACAACCCACCTCGCCATCTCCATTTAACGGGCCAACCCATAGACCATTCTGGCATAGTTGACCTTGCTGGTCAAAGTGTTAGTGCAACAACTAGGGATTGGAACCATATTCCTTTGTCTCCTGCTCCTCAGGGGAGAATTCTAGCCTCAGATGCCAGTGGCTTAAGTCATCAGTCGAACCAGTTCCTAGTAGGAAGCAGTAATACTAATAGTTCTGTGGAATTTGGTGGGCACCACAACGATCTCATGTCCAGCAGGAATCCTGTTGTTCCTCCTCAAAATCTTCATGGTCCCGCTTCTCAAGCTGTGAGGGGAGGTCGCAGTAACTATGCTCAAAGAGCGATGCCTGCTTACAGGGCCACTTCAAGCTACCCACGCTTGGGATTTGTGGCAACTTCTTCCGAGGATGGTTTGCAATCAGTGCCGGAAGCTTATTCTTCCAGACATTCAAGGCCACTCCCTACCATAGGATGGCGTAGCAGTGACAGGAGTGGAAGGTCAAGGACATCGTATGAGAGATTGCACTCACTTTCTGATGAGGCAGATGCCCATGATAGACTGGTTTCCGAGGGTCTTATGGTGGTAGATCGCTCGGGCTTGTATGGTTCAAGAAATTTGCTTGATCAGCATAGGGATATGAGGCTAGACATAGACAACATGAGTTATGAGGAACTACTTGCTCTGGGGGAAAGGATTGGGAATGTCAGCACAGGCTTGTCTGAAAATATGATCTCAAAGTGTTTGATTGAGGCGATATATTGTTATTCAGATCAAATCCATGAGGAAGGAACTTGTGTAATCTGCCTGGAAGAGTACAAGAACAACGAGGAAATTGGGATGCTGATAAAATGTGGCCACAGTTACCATGGTGGCTGCATCAAGAAATGGTTGTCGATGAAGAACGCCTGCCCCATCTGTAAGGCTCCTGCTTTGGCGGATAATTTGAATAAATGA 1515 0.4627 MENMSVAGVHFASHWNSAVGSNEYSSSSISMELPHYPLTTSGPSYDPFLHPSAAGNFCPVPQNYADRPSSSSYYRHVNPGVEGSIVNPTMENGRGPCKRKSPAISVGCDRGSSSRHYIAGNSSDLSISSDLRPEKPTSGSQHWPWDPMGITPSYRGSSLSIAEGSQRNVRSRSTLDLEANLARTHLSNNPPRHLHLTGQPIDHSGIVDLAGQSVSATTRDWNHIPLSPAPQGRILASDASGLSHQSNQFLVGSSNTNSSVEFGGHHNDLMSSRNPVVPPQNLHGPASQAVRGGRSNYAQRAMPAYRATSSYPRLGFVATSSEDGLQSVPEAYSSRHSRPLPTIGWRSSDRSGRSRTSYERLHSLSDEADAHDRLVSEGLMVVDRSGLYGSRNLLDQHRDMRLDIDNMSYEELLALGERIGNVSTGLSENMISKCLIEAIYCYSDQIHEEGTCVICLEEYKNNEEIGMLIKCGHSYHGGCIKKWLSMKNACPICKAPALADNLNK* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01550 504 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 93 498 IPR045191 GO:0061630
Eupl01g01550 504 MobiDBLite consensus disorder prediction 85 148 - -
Eupl01g01550 504 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 417 498 IPR013083 -
Eupl01g01550 504 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 417 498 - -
Eupl01g01550 504 CDD RING-H2_RNF24-like 450 497 - -
Eupl01g01550 504 ProSiteProfiles Zinc finger RING-type profile. 452 494 IPR001841 -
Eupl01g01550 504 SMART ring_2 452 493 IPR001841 -
Eupl01g01550 504 Pfam Ring finger domain 451 494 IPR001841 -
Eupl01g01550 504 SUPERFAMILY RING/U-box 441 498 - -
Eupl01g01550 504 MobiDBLite consensus disorder prediction 115 136 - -
Eupl01g01550 504 MobiDBLite consensus disorder prediction 248 292 - -
Eupl01g01550 504 MobiDBLite consensus disorder prediction 248 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01550 Eupl-Chr1 36499951 36502459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01550 2 500 C3H Transcription Factor Family AT2G37150 45.972 8.78e-106 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01550 - - nnu:104602652 631.713