Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01545 ATGCAGATGATGTCTGGAGATGATCTTTCAATTCCCTCTTCAATTAGAGGGTTTGGTTCTCAGGAACCAAACCCTAATCCTACTAGTAATCAAGTAGTGAAGAAAAAAAGAAATCTACCAGGAACACCAGATCCAGATGCGGAGGTGATAGCTCTCTCGCCGAAGACTCTCATGGCGACGAACAGATTTGTCTGTGAAATCTGCAACAAGGGCTTCCAGAGAGACCAGAACCTACAGCTCCACAGGAGAGGTCATAACCTGCCATGGAAGCTCCGTCAAAGAACAAGCAAAGAGATCCGAAAGAGGGTCTACATCTGCCCAGAGAAGAGCTGCGTGCATCACGATCCATTGAGGGCACTTGGAGACCTCACAGGAATAAAGAAACATTTCAGTAGGAAACATGGAGAAAAGAAATGGAAGTGTGAGAAATGTTCTAAGAAGTATGCAGTTCAGTCCGACTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAGTACAAATGCGACTGCGGAACTATTTTCTCCAGGAAGGATAGCTTCATCACACACAGAGCCTTCTGTGATGCTTTAGCTGAAGAGAGTGTGAGACTCACTACAGTTCCAACAACAAACCTAAACTTCAGAACGGATTCTATCAATGATACAATCGGTAATCATCAACCGTCAAATCTGCTGCATGGATTTAGCAGTCGAGGAAGCCAAGATGCTGCAAGTATCCCTCAATTTTGCTCAGTTTTCAGGCCTGATTTTGCCAACCCAGATACCGCAGAAACTCTCGATGCGGAACAGAAGAAGCCTATGTTGTCACTTTGGCTAGATCATCAAGCCAATTCTCAGCTAAACCCAGTTGATATGGCAGCTCATTCTAATGCTTTCTTAGCCTCAAGTTCGACAAATTTGCCGGAATTGGTTCAAATGGCATCGACAAATCTCTTCGGTTCGTCATCCATGGTTGATTTTGGAGGTTGCATTCAGTCAAAATCAATGGAGGAGGTAGGCAACAAAGGACAGATGGTGGAGGGCTTAGCTTCTTTGTACTCAAACAATAATCAAAATCAGCAATCAAACCTTGCCCATATGTCAGCGACGGCACTTTTACAGAAAGCAGCTCAAATGGGAGCTACAAGGAGCAACCCTTCATTCGTCGGCGGATTTGGAGTAGTGAGCTCCTCTTCCTCTGATACTACAAGCTACAATCTTCACTCACAGAACAGAAACGAATTCCATCAGTTGTTCCGGCAAGTGAAGCAACCAGAGAACTTAAGCAATGTGATGAATTCGATATCGACCCCAACAGCTACCGCGAGCAATCTCGATCGTCTGATGATGCCAAAAAATGGAAAACAAGGCCAATCTGTTCAGTTAAAGCTCCATCCTAGTACTAATGAAGTCGAACACAGTTTAACAAGAGATTTCCTTGGCGTAGGAGGCGATGCTGGTCGTCCCTTCCTACAACAGGAGTTAGCCAAATTTGCTTCAATTGGTTCAGCCATGAACTTGAGCCAATACAATGGCAACCACTGA 1524 0.4462 MQMMSGDDLSIPSSIRGFGSQEPNPNPTSNQVVKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEIRKRVYICPEKSCVHHDPLRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTIFSRKDSFITHRAFCDALAEESVRLTTVPTTNLNFRTDSINDTIGNHQPSNLLHGFSSRGSQDAASIPQFCSVFRPDFANPDTAETLDAEQKKPMLSLWLDHQANSQLNPVDMAAHSNAFLASSSTNLPELVQMASTNLFGSSSMVDFGGCIQSKSMEEVGNKGQMVEGLASLYSNNNQNQQSNLAHMSATALLQKAAQMGATRSNPSFVGGFGVVSSSSSDTTSYNLHSQNRNEFHQLFRQVKQPENLSNVMNSISTPTATASNLDRLMMPKNGKQGQSVQLKLHPSTNEVEHSLTRDFLGVGGDAGRPFLQQELAKFASIGSAMNLSQYNGNH* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01545 507 FunFam protein indeterminate-domain 12-like 42 110 - -
Eupl01g01545 507 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Eupl01g01545 507 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 496 IPR031140 -
Eupl01g01545 507 MobiDBLite consensus disorder prediction 1 36 - -
Eupl01g01545 507 Pfam Zinc finger, C2H2 type 63 85 IPR013087 -
Eupl01g01545 507 SMART c2h2final6 63 85 IPR013087 -
Eupl01g01545 507 SMART c2h2final6 139 159 IPR013087 -
Eupl01g01545 507 SMART c2h2final6 104 134 IPR013087 -
Eupl01g01545 507 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Eupl01g01545 507 Gene3D Classic Zinc Finger 118 195 - -
Eupl01g01545 507 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Eupl01g01545 507 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Eupl01g01545 507 MobiDBLite consensus disorder prediction 1 46 - -
Eupl01g01545 507 Gene3D Classic Zinc Finger 41 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01545 Eupl-Chr1 36432008 36434732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01545 1 251 IDZ Gene Family AT5G03150 63.701 6.85e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl01g01545 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01545 K25870 - nnu:104594822 750.74