Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01532 ATGGGAAATATTGGAAGCAGCGGCAGTGGCAGCAGTAGGCGGAGGCATGGGAGCCATAACAGTCACCCGAATCCCCCGCCACCTGAATCTCCCCAGCCTGAAATTACTGGAAACCGATATGTTTTTGCTGCTGCCACCCCTTACCCACCTCAATACCCGAACCCTGATCCGCCTCAGTACTACCAGTACTCAGGTTATTATTCCTCACCGCCACCGCCACCGCCACCGCCACCGCCTATGCCAGTCCCATTGCCCGCTCCGTTTGATCAGCACAGTGGGGGTGGCGATCACCACGTGGATCCTGTCCAAGCAAATTGGGTCGGTGGGCGATACCCTTCCGGCTCTGTTCCCCCTGCCTCTACACATTGTGTTGAGCATCAGAAGGCCATCACAATCCGTAATGATGTTAATCTCAAGAAGGAGACTTTGAGGATAGAGCCGGACGAGGAGAACCCTGGGCATTTCCTTGTTGCATTCACCTTTGATGCCACCGTTGCAGGAAGCATCACTGTTATCTTCTTCGCAAAAGAAGGTGCAGATTGTAACCTGATACCAGTGAGGGGGAGCCTGTTTGAACCGGTCATAGTATCTTTCCAACAAGGTCTGGGTCAGAAGTTCAGGCAACCTTCAGGAACTGGAATTGACTTCTCAATGTTCGAGGAGACAGATCTACTGAAAGAGGATGATATGGAAGTGTATCCTCTTGCTGTAAAGGCGGAGGCATCCCCATTCAATCTTAATGGATCTGATGGGGGGAACCCAGTGCCAGGAACTGTAACTTCTCAAATCACACAGGCAGTGTTTGAGAAGGAGAAGGGTGAGTACCAGGTGAGAGTGGTAAAGCAGATCCTGTGGGTGAATGGGACAAGGTACGAGCTACAGGAGATTTATGGGATTGGAAATTCAGTTGACAGTGACTTTGATGGGAATGACCCTGGGAAAGAATGCGTCATCTGTCTCTCAGAACCACGGGATACGACTCTCCTTCCGTGCCGACATTTGTGTATGTGCAGTGGGTGTGCGAAGGTTCTGAGGTTCCAGACAAATCGATGCCCAATTTGCCGTCAGCCAGTTGAGCGGTTCCTGGAGATCAAGGTCAACAACTGA 1107 0.514 MGNIGSSGSGSSRRRHGSHNSHPNPPPPESPQPEITGNRYVFAAATPYPPQYPNPDPPQYYQYSGYYSSPPPPPPPPPPMPVPLPAPFDQHSGGGDHHVDPVQANWVGGRYPSGSVPPASTHCVEHQKAITIRNDVNLKKETLRIEPDEENPGHFLVAFTFDATVAGSITVIFFAKEGADCNLIPVRGSLFEPVIVSFQQGLGQKFRQPSGTGIDFSMFEETDLLKEDDMEVYPLAVKAEASPFNLNGSDGGNPVPGTVTSQITQAVFEKEKGEYQVRVVKQILWVNGTRYELQEIYGIGNSVDSDFDGNDPGKECVICLSEPRDTTLLPCRHLCMCSGCAKVLRFQTNRCPICRQPVERFLEIKVNN* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01532 368 FunFam probable E3 ubiquitin-protein ligase LOG2 300 365 - -
Eupl01g01532 368 ProSiteProfiles Zinc finger RING-type profile. 316 355 IPR001841 -
Eupl01g01532 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 365 IPR013083 -
Eupl01g01532 368 MobiDBLite consensus disorder prediction 67 86 - -
Eupl01g01532 368 Pfam Zinc finger, C3HC4 type (RING finger) 314 360 - -
Eupl01g01532 368 SUPERFAMILY RING/U-box 315 360 - -
Eupl01g01532 368 PANTHER MAHOGUNIN 1 365 IPR045194 GO:0061630
Eupl01g01532 368 SMART ring_2 316 354 IPR001841 -
Eupl01g01532 368 MobiDBLite consensus disorder prediction 1 94 - -
Eupl01g01532 368 CDD mRING-HC-C3HC5_MGRN1-like 314 355 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01532 Eupl-Chr1 36285144 36289642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01532 109 335 C3H Transcription Factor Family AT3G09770 63.090 8.68e-96 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01532 - - nnu:104602634 504.982