Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01528 ATGGGAGCTGAAGAGGAATCAATCTCTGAGGAAAAAGACGAGGGTTCATGCAACAGAACAACTGTTCTTCTCAACCAAAAGACTGAACATTTGACTGGAATAATGAAAGGAACCACCCATTCTCAACACTGGAGACGACAAAACCTCTTCCTTGAGATACCCTCAAGAACTTTAGAGGACTCTTCTGAGGATTTTGTGAGAATAAACATGCCGCCAACACCAAGTCCCACTCCCACAAAAGTAAATTTACCCCGAACACCCAGCCCTTCTTCTGCAAGAGTATATGGATCCCCAGGTCCCTCTTCATCTAAAGGTAAATCATCCATAAAAGGCCTCATACCACGAGTAAGCTTCAAGTATCGGAATTCAAATTCAGAGATCGAGAAGGCGGCTGTCCTAGCTGTAGGAACTTCATCGGCAGGGCGACGCGAAAAGCCTTCTGTCACGAGGTCATTGTCTCTTACAAAGATATTTACACCCAGGATGAAGAGAACATCATCTCTACCTGTTACGCCGATTGGACACTCAAACCCAGAATCTGTGCGTGGAGGAAGCACGGTCGATCCATTGAATTCAACTAAAAAAGGGGCCCAGCGGCACATATCTCGTTCTCTTTCAGTACCAGTGAACAACAAAGCAAGAAGCATAAGGCGAATGGATTCCATAGGTGGCGTATTTCGTGTGATTCCTTCGACTCCACGATTTGTAGAAGGGAATGGCACCGCATCAAATATCACTCCAACAGTAGATGCTGAGAACAATGATGCTGATGGTGAAGATATTCCGGAAGAAGAGGCTGTTTGTAGAATCTGTTTGATCGAGCTTGGTGAAGGCGGTGCCACCCTCAAGATGGAATGCAGCTGCAAAGGCGAACTTGCCCTGGCCCACCAAGAATGTGCCGTAAAATGGTTTAGCATCAAGGGTAACAAGAATTGCGATGTGTGTAAACAGGAGGTTCAGAACCTCCCTGTCACCCTTCTACGAATCCAAAGTTCCCAGACCCTTAATACACATGCAAACAGAAGTCAGCAAGTGGCGACTCAGCAATACAGGGTTTGGCAGGACGTGCCCGTTCTTGTCATTGTCAGCATGCTTGCCTACTTTTGTTTTCTCGAACAGCTTTTGGTCGCCAAAATGGAAACTGGTGCGATTGCAATATCACTGCCGTTTTCCTGCATGCTGGGTCTTCTTGCATCCATGACATCGTCGACCATGGTGAGGAGAAGATTTGTCTGGGTCTATGCATCAACTCAATTCGCACTGGTGGTTCTCTTTGCTCATCTTTTCTATTCATTGCTTCATGTGCAAGCTCTTCTATCCATCCTCCTTTCCACATTTGCTGGGTTTGGTGTTGCCATGAGTGGAAATTCTATACTTGTTGAGTTCTTGAGATGGAGGAGAAGGTGGTGTGCTTTATCAGATCATCGTCGTGGCTCCCGAGAGGTCCCTCAGCCAGACCAATTGCCAGAAGGTGTACATCCACCACAAACAGGTCCTCCTAATCACCAGGAAATTGACGCAGAACATCCAACAATTCAACAAGGGAGTTGA 1551 0.4649 MGAEEESISEEKDEGSCNRTTVLLNQKTEHLTGIMKGTTHSQHWRRQNLFLEIPSRTLEDSSEDFVRINMPPTPSPTPTKVNLPRTPSPSSARVYGSPGPSSSKGKSSIKGLIPRVSFKYRNSNSEIEKAAVLAVGTSSAGRREKPSVTRSLSLTKIFTPRMKRTSSLPVTPIGHSNPESVRGGSTVDPLNSTKKGAQRHISRSLSVPVNNKARSIRRMDSIGGVFRVIPSTPRFVEGNGTASNITPTVDAENNDADGEDIPEEEAVCRICLIELGEGGATLKMECSCKGELALAHQECAVKWFSIKGNKNCDVCKQEVQNLPVTLLRIQSSQTLNTHANRSQQVATQQYRVWQDVPVLVIVSMLAYFCFLEQLLVAKMETGAIAISLPFSCMLGLLASMTSSTMVRRRFVWVYASTQFALVVLFAHLFYSLLHVQALLSILLSTFAGFGVAMSGNSILVEFLRWRRRWCALSDHRRGSREVPQPDQLPEGVHPPQTGPPNHQEIDAEHPTIQQGS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01528 516 MobiDBLite consensus disorder prediction 84 108 - -
Eupl01g01528 516 MobiDBLite consensus disorder prediction 166 202 - -
Eupl01g01528 516 MobiDBLite consensus disorder prediction 478 516 - -
Eupl01g01528 516 CDD RING_CH-C4HC3_MARCH 268 316 - -
Eupl01g01528 516 ProSiteProfiles Zinc finger RING-CH-type profile. 260 322 IPR011016 GO:0008270
Eupl01g01528 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 323 IPR013083 -
Eupl01g01528 516 SMART ringv_2 267 316 IPR011016 GO:0008270
Eupl01g01528 516 SUPERFAMILY RING/U-box 264 319 - -
Eupl01g01528 516 PANTHER OS02G0165000 PROTEIN 18 484 - -
Eupl01g01528 516 Pfam RING-variant domain 268 315 IPR011016 GO:0008270
Eupl01g01528 516 MobiDBLite consensus disorder prediction 65 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01528 Eupl-Chr1 36235229 36241628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01528 252 322 C3H Transcription Factor Family AT2G37950 41.667 7.74e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01528 - - nnu:104594842 704.516