Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01506 ATGATCACATTTACGGATTCCATGAAAGAACCGATGAAGGAAACGGAAAAATGCTTGGATTCTCAACTCTGGCATGCCTGCGCCGGAGGGATGGTGCAGATGCCACTGGTGAACTCAAAGGTCTTCTACTTCCCACAGGGCCAAGCAGAGCATGCACATGGGAACGTGGATTTCGGAAATACCCCAAGGATTCCAGCGCTCATCCTCTGCAGAGTTGCAGCTGTGAAATTCATGGCAGATCCTGAAACGGACGAGGTTTATGCAAAGATAAAGTTGGTTCCTATGAGGAACAACGAGCCTGACTACGACGATGATGGTGTTCTTGGAAGCAACGGATCTGAGGTCACAGAGAAACCTGCATCTTTCGCAAAAACATTGACACAGTCTGATGCCAACAATGGTGGAGGTTTCTCTGTTCCTCGTTACTGTGCAGAGACAATCTTTCCCCGCCTGGACTATTCAGCAGATCCTCCTGTCCAAACCGTCCTTGCAAAGGATGTTCATGGTGAGATTTGGAAATTCCGGCATATTTATAGAGGGACTCCACGTCGTCATCTCCTGACAACGGGATGGAGCACTTTTGTGAACCAGAAGAAGCTCGTTGCTGGGGATTCAATTGTGTTTTTAAGAGCAGAGAATGGGGATCTCTGTGTTGGAATCCGGCGGGCGAAGAGAGGGATTGGTGGTGGACCTGAGTCCCCATCTGGGTGGAATCCAGCTGCAGGAAATTGTATCTCACCATATGGTGGGTTTTCTGTCTTCTTGAGGGAAGACGAGAACAAGCTAATGAGAAATGTTAATGGTGGGAATTCAAACGGCAGTGGGGGTTTGAGGGGAAGGGGAAGAGTGAGGCCTGAGTCTGTTATTGAGGCTGCGGCTCTTGCTGGCAACGGGCAGCCCTTTGAGGTAATTTACTACCCGCGAGCAAGCACTCCAGAGTTCTGTGTGAAGGCCTCATCCGTAAGGGCAGCGATGCGGATCCAGTGGTGTTCGGGGATGAGGTTCAAGATGGCATTTGAGACCGAGGATTCATCGCGGATAAGCTGGTTCATGGGAACTATATCTTCTGTTCAGGTTGCCGACCACATCCGTTGGCCTAATTCACCATGGAGGCTTCTCCAGGTGACATGGGATGAGCCAGATTTGCTCCAAAACGTGAAGCGTGTCAGCCCATGGTTGGTCGAATTGGTATCAAACATGCCTGCCATCCAACTGTCACCCTTCTCACCACCAAGAAAGAAATTGCGGCTTCCGCATCACCCAGATTTCCCCCTCGACGGCCAACTTCCAATGGCGTCATTTTCAGGCAACCCCCTCGGACCCAGCAGCCCCTTGTGTTGTCTATCAGACAACACTACTGCAGGCATACAGGGAGCCAGGCATACTCAATTTGGTATATCTTTATCAGATCTCCATCTTAACAAACTGCAGTCGGGTCTGTTTCTGGCCGGTATTCAGCGGCTCCATCACGCTGCCCCCCCCTCCAGAATCTCCAATGGCCTCATCATGGGCAACCCCAACAGCAATGAGAATGTATCTCTCTTGCTAACCATGGGGAATTCTACCCAAAATTCAAAGAAATCTGATGACAGGAAGACACCACAGTTTGTACTCTTTGGTCAACCAATACTCACTGAGCAACAGATCTCTCTTAGCTGCTCCGGTGATACAGTTTCACCGGTTCTTACTGGAAACAGTTCATCAGATGGGAATCTGGAGAAGACAGCTAACTTCTCCGACGGTTCTGGATCTGCATTTCATCACCATGGTCCATCAGAGAATTCTTCTTGTGAAGGGTTTCCATGGCACAAGGATCGACAGACAAGTGAGCTTGGTTTGGAGACCGGCCACTGTAAAGTGTTCATGGAGTCGGAGGATGTGGGTCGGACTCTTGACCTGTCGGTCCTTGGGTCATACGAAGAGCTATACAGAAGGCTGGCAAACATGTTTGGCATAGAAAGATCTGAGATGCTGAGCCAGGTGCTCTATCGGGATGCTACAGGTGCAATTAAACACACTGGAGATGAACCATTCAGTGAGTTTATGAAAACCGCGAGGAGGCTGACAATTCTAATGGATTCAAGCAGCAACAACATGGGAAGGACATGGATCACAGGGTTGCGGAATGCAGAAAACGGACTAAACTCTTCTAGTAAGACAGGTCCGCTAAGCATATTTGCTTAA 2184 0.4936 MITFTDSMKEPMKETEKCLDSQLWHACAGGMVQMPLVNSKVFYFPQGQAEHAHGNVDFGNTPRIPALILCRVAAVKFMADPETDEVYAKIKLVPMRNNEPDYDDDGVLGSNGSEVTEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPESPSGWNPAAGNCISPYGGFSVFLREDENKLMRNVNGGNSNGSGGLRGRGRVRPESVIEAAALAGNGQPFEVIYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMAFETEDSSRISWFMGTISSVQVADHIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPAIQLSPFSPPRKKLRLPHHPDFPLDGQLPMASFSGNPLGPSSPLCCLSDNTTAGIQGARHTQFGISLSDLHLNKLQSGLFLAGIQRLHHAAPPSRISNGLIMGNPNSNENVSLLLTMGNSTQNSKKSDDRKTPQFVLFGQPILTEQQISLSCSGDTVSPVLTGNSSSDGNLEKTANFSDGSGSAFHHHGPSENSSCEGFPWHKDRQTSELGLETGHCKVFMESEDVGRTLDLSVLGSYEELYRRLANMFGIERSEMLSQVLYRDATGAIKHTGDEPFSEFMKTARRLTILMDSSSNNMGRTWITGLRNAENGLNSSSKTGPLSIFA* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01506 727 SMART B3_2 122 224 IPR003340 GO:0003677
Eupl01g01506 727 MobiDBLite consensus disorder prediction 562 582 - -
Eupl01g01506 727 ProSiteProfiles PB1 domain profile. 615 695 IPR000270 GO:0005515
Eupl01g01506 727 FunFam Auxin response factor 329 402 - -
Eupl01g01506 727 CDD B3_DNA 121 222 IPR003340 GO:0003677
Eupl01g01506 727 Gene3D - 120 224 IPR015300 -
Eupl01g01506 727 Gene3D - 329 402 - -
Eupl01g01506 727 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Eupl01g01506 727 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 700 IPR044835 GO:0003677|GO:0006355|GO:0009725
Eupl01g01506 727 MobiDBLite consensus disorder prediction 562 600 - -
Eupl01g01506 727 FunFam Auxin response factor 120 224 - -
Eupl01g01506 727 Gene3D - 614 700 - -
Eupl01g01506 727 SUPERFAMILY DNA-binding pseudobarrel domain 119 225 IPR015300 -
Eupl01g01506 727 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Eupl01g01506 727 Pfam Auxin response factor 291 374 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01506 Eupl-Chr1 35976847 35982237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01506 11 699 B3 DNA Binding Superfamily AT4G30080 61.980 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Eupl01g01506 B3 4.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01506 - - nnu:104602613 1290.02