Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01505 ATGATCGGGCCGAGCTTTATAGATGAAATAGACATCGATATCGGCGAGGATTTCTTCGACCACATTGATGATTTACTTGATTTTCCAAGTGAAGACGTCGAAGGCGGAGCTGTTGGAGGAGATTGCAATGGCTTCCAAGGCGTTTGGCCTGCCCCACCAGACAGTTTGGCGGGTTCTAGTTCTGTTTTCTCCGGCAACAGCACCAATAGCAGTTCAGAACTTCCCACAGAGCTTCCTGTTCCTTATGAAGACGTTGCTCAACTGGAATGGTTGTCAGACTTCGTCGAGAATGCATTCTCTCCTGGAAACATCACCCTTGATAATGACTCCTCTGACAACAAAGACTCCCAAGACTCCCATCAGTTCCATACCTCCAGCCCAGTCTCCGTCCTCGAAAGCAGCAGCTCTTGCTCTGGAGGAAAGACCATGCGGCTGAGCCCTGAGACTTTTGTCCCTGGGCGCGGGCGTGCTCGGAGTAAGCGCCCACGTCCCGCGACCTTCAATCCGCGGTCGGTGCTCCCGCTTATCTCCCCCACCTCCTCCATAACTGATCTCACCATGTCAATTTCCGCCTCAGAATTACAATCAGAGTTGGAGAGTTTTGCAGAGTCACATCCTTCAAAGAAGATACTGAAACTCCCTGTGACAGAGCTGAAGAAAAAGAAAAAGAAGTTGTCACCTATGCACAGTAGCATGGACCAAGTTGATTCACCGCAGCAGCCTATTGCAATCAGGAAATGTAAGCATTGTGAGATAACAAAGACCCCGCAGTGGAGAGCAGGACCAATGGGGCCCAAGACCCTTTGCAATGCTTGTGGCGTACGGTACAAGTCGGGCCGGCTCTTTCCAGAATACCGCCCTGCAGCAAGCCCAACCTTTGTTGCGTCATTGCACTCCAACTCCCATAAGAAAGTTATAGAAATGAGGACCAAGGTTGACCAGAATGTGGCAGCAGGAACTGAGAGTGTGACAACTCCTCCCCCGGAATTCATGCCAAAGAGCAGCAATTTGCTTGATTACATATAA 1026 0.5019 MIGPSFIDEIDIDIGEDFFDHIDDLLDFPSEDVEGGAVGGDCNGFQGVWPAPPDSLAGSSSVFSGNSTNSSSELPTELPVPYEDVAQLEWLSDFVENAFSPGNITLDNDSSDNKDSQDSHQFHTSSPVSVLESSSSCSGGKTMRLSPETFVPGRGRARSKRPRPATFNPRSVLPLISPTSSITDLTMSISASELQSELESFAESHPSKKILKLPVTELKKKKKKLSPMHSSMDQVDSPQQPIAIRKCKHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFVASLHSNSHKKVIEMRTKVDQNVAAGTESVTTPPPEFMPKSSNLLDYI* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01505 341 PIRSF Txn_fac_GATA_plant 8 335 IPR016679 GO:0003677|GO:0005634|GO:0045893
Eupl01g01505 341 MobiDBLite consensus disorder prediction 318 341 - -
Eupl01g01505 341 ProSitePatterns GATA-type zinc finger domain. 247 272 IPR000679 GO:0006355|GO:0043565
Eupl01g01505 341 MobiDBLite consensus disorder prediction 57 76 - -
Eupl01g01505 341 Gene3D - 243 317 IPR013088 GO:0006355|GO:0008270
Eupl01g01505 341 FunFam GATA transcription factor 236 322 - -
Eupl01g01505 341 MobiDBLite consensus disorder prediction 120 143 - -
Eupl01g01505 341 ProSiteProfiles GATA-type zinc finger domain profile. 245 277 IPR000679 GO:0006355|GO:0043565
Eupl01g01505 341 MobiDBLite consensus disorder prediction 102 172 - -
Eupl01g01505 341 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 246 304 - -
Eupl01g01505 341 PANTHER GATA TRANSCRIPTION FACTOR 16 314 - -
Eupl01g01505 341 CDD ZnF_GATA 246 293 IPR000679 GO:0006355|GO:0043565
Eupl01g01505 341 MobiDBLite consensus disorder prediction 56 77 - -
Eupl01g01505 341 SMART GATA_3 241 291 IPR000679 GO:0006355|GO:0043565
Eupl01g01505 341 Pfam GATA zinc finger 247 280 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01505 Eupl-Chr1 35949785 35957616 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01505 22 311 C2C2-Gata Transcription Factor Family AT4G32890 35.831 1.28e-43 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Eupl01g01505 GATA 3.3e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01505 - - nnu:104602611 363.999