Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01497 ATGGCTTCGTCTTCTCTCGTCCTCCCATCTCTCTCTCTCAAAACCCTGGTTTTCTCCAAAACCAGAAACCCTTCTATCTCTCTCTTCTCTCCCAACATCTCACTCAAATCCCAAAACAAACCCATTTCAATCACTTCTGCTTTTCTCTCTCAGAGAAGGCACGAGAGTCTATCGTCTCGTTTCGTTCGAAACGTAGCGATTTCCTCCGAGTTCGACCAAGAAGAGGAGGTCTCCAGTGAAAGAGGCGAAGCTAGTTTCTCCCCAGATTTGAAGCTCTTTGTCGGTAACCTCCCTTTCAACGTCGACAGTGCTGAGCTCGCTGGATTATTCGAACGAGCTGGAAATGTCGAGATGGTCGAGGTAATTTACGACAAGGTAACTGGAAGAAGCCGGGGGTTTGGGTTTGTGACCATGTCTACGGTCGAGGAAGTGGAAGCAGCGGCGCAGCAGTTCAATGGCTATGAACTTGATGGGAGGCAATTGAGGGTGAATTCCGGGCCTCCTCCTCCTAAGGAAGATTCTCCTTCCAGGGGACCCCGAGGTGGGGGTAGTTTCGATTCTCCCAACCGGGTGTATGTTGGCAACCTTTCATGGGGTGTTGATGATTTAGCTCTTGAGACCCTGTTCAGTGAGCAAGGAAAGGTTATGGAGGCCAAAGTGGTTTATGACAGGGAGACTGGTAGGTCAAGGGGTTTTGGGTTCGTCACTTACGGCTCTGCTGAGGAGGTCAACAGTGCAATTTCATCCTTAGATGGTGTTGATTTGAATGGCAGAGCAATCCGAGTAACCATGGCGGAAGCAAGGCCAAGGCGCCAATTTTGA 822 0.4988 MASSSLVLPSLSLKTLVFSKTRNPSISLFSPNISLKSQNKPISITSAFLSQRRHESLSSRFVRNVAISSEFDQEEEVSSERGEASFSPDLKLFVGNLPFNVDSAELAGLFERAGNVEMVEVIYDKVTGRSRGFGFVTMSTVEEVEAAAQQFNGYELDGRQLRVNSGPPPPKEDSPSRGPRGGGSFDSPNRVYVGNLSWGVDDLALETLFSEQGKVMEAKVVYDRETGRSRGFGFVTYGSAEEVNSAISSLDGVDLNGRAIRVTMAEARPRRQF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01497 273 FunFam 28 kDa ribonucleoprotein, chloroplastic 186 271 - -
Eupl01g01497 273 Gene3D - 186 273 IPR012677 -
Eupl01g01497 273 Gene3D - 63 185 IPR012677 -
Eupl01g01497 273 SUPERFAMILY RNA-binding domain, RBD 85 186 IPR035979 GO:0003676
Eupl01g01497 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 168 IPR000504 GO:0003723
Eupl01g01497 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 162 IPR000504 GO:0003723
Eupl01g01497 273 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 261 IPR000504 GO:0003723
Eupl01g01497 273 PANTHER OS02G0815200 PROTEIN 27 271 - -
Eupl01g01497 273 CDD RRM2_NsCP33_like 190 265 - -
Eupl01g01497 273 MobiDBLite consensus disorder prediction 157 188 - -
Eupl01g01497 273 FunFam Ribonucleoprotein A, chloroplastic 67 185 - -
Eupl01g01497 273 SUPERFAMILY RNA-binding domain, RBD 186 272 IPR035979 GO:0003676
Eupl01g01497 273 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 267 IPR000504 GO:0003723
Eupl01g01497 273 SMART rrm1_1 91 164 IPR000504 GO:0003723
Eupl01g01497 273 SMART rrm1_1 190 263 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01497 Eupl-Chr1 35818229 35822275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01497 92 272 Eukaryotic Initiation Factors Gene Family AT4G34110 30.939 7.63e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01497 - - nnu:104602604 423.705