Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01459 ATGGTACCGATGGAGGAATCGAAGGAGGTAGTAGATCAACTGTTCGATGTTGTGAAGGAGATATCTGGATTTCCCGAGTGTCGGAACACGTCGAAGAAGATGTATTGTAATCTTGTGAGAAGGGTGAAGCTCTTGAGCCCTCTTTTTGAGGAATTGAAGGACAGCGAAAAGGTTCTCGGAGAAGAAGAGGTTCAAGCTCTCATGTCGTTGAAGGTTGCTTTGAATTCGGCTAAGGAGCTTCTTCGATCGGTCAATGAAGGGAGCAAGCTCTATCAGGCTCTAGAAAAGGAGACAATTGCAAAAAAATTCCATGAGGTGACAGAACAAATTGAGAAAGCATTGAGCGAGATTTCCTATGATAAACTTGATATATCGGAAGAAGTCCAAGAACAGATTCAACTCGTGCATGCTCAGTTCAAAAGGGCAAAAGAAAGAATGGACTCACCTGATTTACAACTGTTAATGGATTTATGCTCGGCACAGAAAGAAAAAGACCCTGACCCAGCCACCCTAAGAAGACTCTCAGAAAAGATGCAACTCAGAACCATCAATGATCTCAAGAAAGAGTCACTTGCTCTGCACGAAATGGTTATCTCCTGCGACGGAGATCCAGGGGACTGCGTTGAGGAGATGTCAGCCTTGCTTAAGAAGCTAAAGGATTCTGTACTCACTGAAAACCTAGATTCAGACACCTCAGAAAGCGAAAAAAGCTTCATGAAACACAGATCACCTGTCATCCCAGATGATTTCCGGTGCCCAATATCTCTTGAATTGATGAAAGATCCTGTCATCGTCTCTACTGGACAGACTTATGAACGGTCTTGCATTCAGAAATGGCTGGATGCTGGGCACAAGACCTGTCCCAAGACACAGCAGACTTTGTTGCATACTGCTCTTACACCCAACTATGTCTTGAAGAGTCTAATTGCTCAGTGGTGCGAGAGCAACGGCATCGAGCTGCCGAAAAAGCAAGGGAATTGTAGAAACAGGAAGTCAGGTAGCTGTGTTTCAGACTGTGATCGAGCAGCTATTGATGCCTTGTTACAGAAATTATCGCATGGGAACTCAGAAGAGCAAAGAGCAGCTGCTGGTGAGCTCCGGTTGCTGGCAAAGAGAAATGCTGATAACAGAGTATGCATTGCAGAGGCAGGAGCCATTCCCCTGCTTGTAGAACTGTTATCCTCCACTGATCCTAGGACTCAGGAACACGCAGTTACAGCACTTCTCAACCTTTCCATAAATGAGAGTAACAAGGGAAGCATAGTTAATGCAGGAGCAATACCTGATATAGTAGATGTGCTAAAAAATGGCAGCATGGAAGCGAGGGAGAACGCAGCTGCCACCCTGTTCAGTCTATCCGTCGTAGACGAGAACAAGGTGGCAATAGGGGCAGCAGGGGCCATTCCGGCTCTTATTGACCTCCTATGCCACGGGAGTCCCAGAGGCAAGAAGGATGCAGCTACCGCAATTTTTAACCTTTCAATCTATCAGGGCAACAAGGTTAGGGCCGTGAGGGCTGGGATTGTGGGGCCACTGATGAGGCTGCTGATTGATGCCGGGGGTGGAATGGTGGACGAAGCACTTGCAATACTGGCCATCCTTGCAAGCCATCAGGAAGGGAAGTCAGCGATTGGTCAGGCTGAGCCCATCCCAGTTTTGATTGAGGTGATGAGGACTGGGTCCCCACGTAACCGGGAGAATGCTTCAGCTGTGTTATGGTCGTTATGCACAGGTGATGTGCAGCATCTGCAAACTGCAAAGGAACTTGGGGCAGAAGAGGTACTGAAGGAATTGACAGAGAACGGCACTGATCGGGCTAAGAGGAAAGCTGGAAATATTCTAGAGCTGCTGCATCGGACAGCTGAAGTGGTTGTTAGCCCATAA 1884 0.474 MVPMEESKEVVDQLFDVVKEISGFPECRNTSKKMYCNLVRRVKLLSPLFEELKDSEKVLGEEEVQALMSLKVALNSAKELLRSVNEGSKLYQALEKETIAKKFHEVTEQIEKALSEISYDKLDISEEVQEQIQLVHAQFKRAKERMDSPDLQLLMDLCSAQKEKDPDPATLRRLSEKMQLRTINDLKKESLALHEMVISCDGDPGDCVEEMSALLKKLKDSVLTENLDSDTSESEKSFMKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALTPNYVLKSLIAQWCESNGIELPKKQGNCRNRKSGSCVSDCDRAAIDALLQKLSHGNSEEQRAAAGELRLLAKRNADNRVCIAEAGAIPLLVELLSSTDPRTQEHAVTALLNLSINESNKGSIVNAGAIPDIVDVLKNGSMEARENAAATLFSLSVVDENKVAIGAAGAIPALIDLLCHGSPRGKKDAATAIFNLSIYQGNKVRAVRAGIVGPLMRLLIDAGGGMVDEALAILAILASHQEGKSAIGQAEPIPVLIEVMRTGSPRNRENASAVLWSLCTGDVQHLQTAKELGAEEVLKELTENGTDRAKRKAGNILELLHRTAEVVVSP* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01459 627 Coils Coil 77 97 - -
Eupl01g01459 627 CDD RING-Ubox_PUB 247 299 IPR045210 -
Eupl01g01459 627 FunFam RING-type E3 ubiquitin transferase 246 319 - -
Eupl01g01459 627 Coils Coil 125 145 - -
Eupl01g01459 627 CDD MLKL_NTD 38 140 - -
Eupl01g01459 627 SUPERFAMILY ARM repeat 342 617 IPR016024 -
Eupl01g01459 627 SMART Ubox_2 249 312 IPR003613 GO:0004842|GO:0016567
Eupl01g01459 627 FunFam RING-type E3 ubiquitin transferase 461 624 - -
Eupl01g01459 627 Gene3D - 418 520 IPR011989 -
Eupl01g01459 627 SMART arm_5 373 413 IPR000225 GO:0005515
Eupl01g01459 627 SMART arm_5 537 577 IPR000225 GO:0005515
Eupl01g01459 627 SMART arm_5 455 495 IPR000225 GO:0005515
Eupl01g01459 627 SMART arm_5 414 454 IPR000225 GO:0005515
Eupl01g01459 627 SMART arm_5 496 536 IPR000225 GO:0005515
Eupl01g01459 627 Gene3D - 521 625 IPR011989 -
Eupl01g01459 627 Pfam U-box domain 246 316 IPR003613 GO:0004842|GO:0016567
Eupl01g01459 627 FunFam RING-type E3 ubiquitin transferase 7 120 - -
Eupl01g01459 627 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 319 IPR013083 -
Eupl01g01459 627 Gene3D - 6 120 IPR036537 GO:0007166
Eupl01g01459 627 FunFam RING-type E3 ubiquitin transferase 343 460 - -
Eupl01g01459 627 Pfam Armadillo/beta-catenin-like repeat 373 412 IPR000225 GO:0005515
Eupl01g01459 627 Pfam Armadillo/beta-catenin-like repeat 456 494 IPR000225 GO:0005515
Eupl01g01459 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 425 467 IPR000225 GO:0005515
Eupl01g01459 627 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 384 426 IPR000225 GO:0005515
Eupl01g01459 627 Gene3D - 326 417 IPR011989 -
Eupl01g01459 627 PANTHER U BOX DOMAIN-CONTAINING 32 617 - -
Eupl01g01459 627 SUPERFAMILY RING/U-box 245 321 - -
Eupl01g01459 627 ProSiteProfiles U-box domain profile. 245 319 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01459 Eupl-Chr1 35284348 35289792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01459 8 626 U-box Gene Family AT3G54850 67.258 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01459 - - nnu:104595098 1006.51