Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01453 ATGATAACTGGAGGGCATCGTCAAGAAAATGGGGAGAAGAACCCACCAAACTTTTCGAGGGGAGGGGCTACGAGGTCTTGGGGGACTACGTTTTCCGGGCAATCGATCTCGACGAGCGGCGGAAGTGCGGGGTCTCCGTCGAGCCGAAGCGAGCCGACGATGGCGACGCCGGTGAGCGAGAGTACTTTCGTTCGATTGAATCATCTCGATATTCACGGAGATGACGCCGGATCTCAAGGCGCCGTTGTTGGGAAGAAGAAGAAGAGAGGACAACGGGCTTTAGGAGGTGATAAGAGTGGTAGGGGACTCCGCCAGTTCAGCATGAAAGTCTGCGAGAAAGTGGAAAGCAAGGGTAGAACTACTTACAACGAGGTTGCAGACGAACTTGTAGCTGAATTTGCTGATCCTAGCAATAGTCTTGCATCTCCGGACCAGCAACAATATGATGAGAAAAACATACGGCGGAGGGTATATGATGCTCTGAATGTTCTCATGGCAATGGATATTATATCCAAAGATAAAAAGGAAATACAATGGAAGGGTCTGCCTCGCACTAGCCTGAATGACATTGAAGAGCTTAAGGCTGAACGTATTGGATTGAGAAACAGGATTGAAAAGAAAGCTGCCTATTTGCAAGAACTGGAGGAACAATTCATAGGTATTCAGAACCTGATAAAACGGAATAAACAATTATATGGGTCAGGAAATGCACCTACAGGGGGTGTGGCTTTACCTTTTATTCTGGTTCAGACACGTCCGCATGCAACTGTTGAGGTGGAAATATCAGAAGATATGCAGCTGGTGCATTTTGACTTCAATAGCACCCCTTTTGAGCTACATGACGACAACTACGTTCTGAAGGCAATGAGATTTTGTGAAAGACCACAGGTCGATGATGGCACTCATGATCCTACTGCAAACGGAGGCGAGGGTTCCAGCATGCTTGGCATTTATCAACCCCACATACCACATCCCTTGAGGTCGAATGCTGCTGGTAGGCCACCCACTTCGCCCCCTCTTCCAGGAATACTAAAAGCACGTGTCAAGCATGAGCATTAA 1059 0.4797 MITGGHRQENGEKNPPNFSRGGATRSWGTTFSGQSISTSGGSAGSPSSRSEPTMATPVSESTFVRLNHLDIHGDDAGSQGAVVGKKKKRGQRALGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERIGLRNRIEKKAAYLQELEEQFIGIQNLIKRNKQLYGSGNAPTGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMRFCERPQVDDGTHDPTANGGEGSSMLGIYQPHIPHPLRSNAAGRPPTSPPLPGILKARVKHEH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01453 352 Pfam Transcription factor DP 189 320 IPR014889 -
Eupl01g01453 352 MobiDBLite consensus disorder prediction 74 101 - -
Eupl01g01453 352 MobiDBLite consensus disorder prediction 296 352 - -
Eupl01g01453 352 PIRSF Txn_factor_DP 3 352 IPR015648 GO:0005667|GO:0051726
Eupl01g01453 352 SMART DP_2 188 350 IPR014889 -
Eupl01g01453 352 Gene3D - 94 186 IPR036388 -
Eupl01g01453 352 SUPERFAMILY "Winged helix" DNA-binding domain 101 182 IPR036390 -
Eupl01g01453 352 PANTHER TRANSCRIPTION FACTOR DP 23 303 IPR015648 GO:0005667|GO:0051726
Eupl01g01453 352 FunFam Transcription factor-like protein DPB 187 312 - -
Eupl01g01453 352 SMART E2F_TDP_2 98 181 IPR003316 GO:0005667|GO:0006355
Eupl01g01453 352 FunFam Transcription factor-like protein DPB 93 186 - -
Eupl01g01453 352 Gene3D Transcription factor DP 187 308 IPR038168 -
Eupl01g01453 352 Pfam E2F/DP family winged-helix DNA-binding domain 101 181 IPR003316 GO:0005667|GO:0006355
Eupl01g01453 352 CDD DP_DD 186 289 IPR014889 -
Eupl01g01453 352 SUPERFAMILY E2F-DP heterodimerization region 187 299 IPR037241 -
Eupl01g01453 352 MobiDBLite consensus disorder prediction 1 57 - -
Eupl01g01453 352 Coils Coil 197 217 - -
Eupl01g01453 352 MobiDBLite consensus disorder prediction 10 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01453 Eupl-Chr1 35205131 35221861 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01453 83 290 E2F-DP Transcription Factor Family AT5G02470 53.589 1.18e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Eupl01g01453 DP 1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01453 K04683 - nnu:104586327 617.461