Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01448 ATGGGGAGAGCTCCTTGTTGTGACAAAGCAAACGTCAAGAAAGGACCATGGTCTCCTGAAGAAGACACAAAGCTCAAGGAGTTCATAGAGAAATATGGGACTGGTGGTAATTGGATTGCTCTCCCCCAAAAAGCTGGTCTGAAGAGATGTGGGAAGAGTTGCAGGTTGAGATGGCTTAACTATCTCAGGCCAAACATAAAACATGGAGAGTTCTCTGATGATGAAGATAGGATTATCTGCACCCTCTTTGCCAGCATTGGAAGCAGGTGGTCAATAATAGCCGCACAGCTTCCAGGCAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTCAAGAAGAAACTCATAGGGATGGTTCCTTCATCTCATAGAAAACCAGCTCACCCCCATTACCCATCTCCTCTTCAAGTTCAAACTGCACCATCGTCAACATACAAAGGCAGTAATACTTATTACACCCCAACTAGGTCTCTTATAGGCCTTGAACCACCCATTTCAATCTCAGCAAATCTTTTGAGCAACAACACTGCAACTACTACTCTTCTTCAAGCCCAAGAAAGCTTAGTGGGTCCCATGCACCATTATCAAGTGAAAGACAATCTTCTCATGTTTGGAGGTGAACCAAGTTGCAGTTCTTCTGATGGGAGTTGCAATCAGATCAGCTATGGTGAACAGATGATTTTGGAGAGTTATTTCTGTAATGAAGTAGAAGAAAGCCAGAAATTCATGCATGGTTGTGGTGTTGGTAGCAATGGGTGGACTGATCAGAGGCCAAATGGGTTCTGGGGAGAGACATTAGAGTCTGGTCTTGAGGAGATTAAGCAACTAGTTACCACTAATGCTTGTAATAACTTCTTCATTGATGAAAACAAGACGCAAGGGAAGGTCATGTACTATTGA 906 0.4349 MGRAPCCDKANVKKGPWSPEEDTKLKEFIEKYGTGGNWIALPQKAGLKRCGKSCRLRWLNYLRPNIKHGEFSDDEDRIICTLFASIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLIGMVPSSHRKPAHPHYPSPLQVQTAPSSTYKGSNTYYTPTRSLIGLEPPISISANLLSNNTATTTLLQAQESLVGPMHHYQVKDNLLMFGGEPSCSSSDGSCNQISYGEQMILESYFCNEVEESQKFMHGCGVGSNGWTDQRPNGFWGETLESGLEEIKQLVTTNACNNFFIDENKTQGKVMYY* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01448 301 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Eupl01g01448 301 MobiDBLite consensus disorder prediction 124 144 - -
Eupl01g01448 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Eupl01g01448 301 PANTHER OS09G0431300 PROTEIN 1 270 - -
Eupl01g01448 301 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Eupl01g01448 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Eupl01g01448 301 Gene3D - 70 134 - -
Eupl01g01448 301 SMART sant 67 115 IPR001005 -
Eupl01g01448 301 SMART sant 13 64 IPR001005 -
Eupl01g01448 301 CDD SANT 16 62 IPR001005 -
Eupl01g01448 301 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Eupl01g01448 301 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Eupl01g01448 301 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Eupl01g01448 301 FunFam Transcription factor RAX3 7 68 - -
Eupl01g01448 301 Gene3D - 7 68 - -
Eupl01g01448 301 CDD SANT 70 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01448 Eupl-Chr1 35121080 35122594 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01448 1 129 MYB Transcription Factor Family AT5G57620 82.946 9.97e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl01g01448 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01448 K09422 - nnu:104586314 434.876