Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01440 ATGGTGGTGAAGAAGAACAGCGACAGCGACGAAGACGAGACTCTCTACTACCGCTACTCCTCTGCCCCTCCATCATCCTCGTCAGCCCAAGATTCATCCAAAACCTCAAAGAGATCAAGCGGCAGCGGAGGCCTCGCCCCATCGAAATCAACGGTGTATGTTGGCAATCTGGACTACCACCTCACAAACTCCGACCTCTTCACCATATTCTCCACCTTCGGCAAGGTCGCCAAGGTCACCGTCCTTAAAGATCGCCAATCACGCCGCAGCCGTGGTGTCGCCTTTGTTCTTTTCGTCTCTCAAGACGATGCCCGCAAAGCCGTACAAGAGATGCAGGGCAAGGTTTTGAACAAACGGACTCTAACGATCTCGATCGCTGCCGATAACGGCCGAGCCACTGAGTTCATACGGCGGAGGGTTTACAAGGACAAGAGCAGGTGCTATGAGTGTGGGGAGGATGGGCATCTATCTTATGAGTGTCCGAAGAATCAACTTGGGCCGAGGGAGAGGCCAGCTCCGAAGAAGGTCCGGAGGGCCCAAGGTGGAAATGGATCGGGGGGATGGCATGGGGAGGATGATGAATCCGACGGTGGAGAAACGTTTGAGGATGATAATTGGGCGTCTGTTGTTGATACGAGAGGGGTCGATGAGAGGTTGTTGAAAGAGAGTGAACGGGTCATGGAGAAGACGATGAAGAAGGAGAAGAAATCTTGTTATTTTAGCGACGAGAGCAATGACGACGAGTAA 747 0.5288 MVVKKNSDSDEDETLYYRYSSAPPSSSSAQDSSKTSKRSSGSGGLAPSKSTVYVGNLDYHLTNSDLFTIFSTFGKVAKVTVLKDRQSRRSRGVAFVLFVSQDDARKAVQEMQGKVLNKRTLTISIAADNGRATEFIRRRVYKDKSRCYECGEDGHLSYECPKNQLGPRERPAPKKVRRAQGGNGSGGWHGEDDESDGGETFEDDNWASVVDTRGVDERLLKESERVMEKTMKKEKKSCYFSDESNDDE* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01440 248 MobiDBLite consensus disorder prediction 1 15 - -
Eupl01g01440 248 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein 2 134 - -
Eupl01g01440 248 SUPERFAMILY Retrovirus zinc finger-like domains 131 163 IPR036875 GO:0003676|GO:0008270
Eupl01g01440 248 Gene3D - 3 134 IPR012677 -
Eupl01g01440 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 50 128 IPR000504 GO:0003723
Eupl01g01440 248 MobiDBLite consensus disorder prediction 19 46 - -
Eupl01g01440 248 MobiDBLite consensus disorder prediction 161 214 - -
Eupl01g01440 248 MobiDBLite consensus disorder prediction 229 248 - -
Eupl01g01440 248 MobiDBLite consensus disorder prediction 1 46 - -
Eupl01g01440 248 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Eupl01g01440 248 Pfam Zinc knuckle 146 162 IPR001878 GO:0003676|GO:0008270
Eupl01g01440 248 SUPERFAMILY RNA-binding domain, RBD 47 138 IPR035979 GO:0003676
Eupl01g01440 248 ProSiteProfiles Zinc finger CCHC-type profile. 146 162 IPR001878 GO:0003676|GO:0008270
Eupl01g01440 248 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 5 247 IPR044598 GO:0000398|GO:0005689
Eupl01g01440 248 FunFam U11/U12 small nuclear ribonucleoprotein 31 kDa protein-like 137 172 - -
Eupl01g01440 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52 121 IPR000504 GO:0003723
Eupl01g01440 248 SMART rrm1_1 51 124 IPR000504 GO:0003723
Eupl01g01440 248 Gene3D - 137 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01440 Eupl-Chr1 34993784 34994530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01440 36 139 Eukaryotic Initiation Factors Gene Family AT4G34110 27.885 1.22e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01440 K13154 - nnu:104587370 376.711