Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01434 ATGGCGAACAACCATCCTTCTTACGTTTTCTACGACGAGGAAGCAGAAAACGAAGATGAAGAAACCGAAGGAGACGAAGACGAAGAAACTGAAGGAGACGAAGACGATGAAGACTACATTCCCTTGCCTAGAACGACAGCGTGGGTTTCGCCGAACTCTCATTCAAGTTCTGCTCAGCCAATTGCCGTCGAAGAAGAAACAAACATGCCTCTTCATCATTCCGAGAATGCGGTGGAATTCATCCAAGATGAAGAAACCGAAGGTGACGAAGACGATGAAGACTACATTCCTCCGATTAGAACGACAGCGAGGGTTTCACCAAACTCTTCGTCAAGTTCTGCTCAGCCCATTGTCCTCGAAGAAGAAACAAACATGCATCTTCATCAGATTTCTGAGAATGCGGTGGAATTCATCGAAGAAGAAGATGACCGAAGAAGAGGAGGAGAAGCGACTTCCTCGTCATCGTTGAAGAGAATTGAAAGGGAAGTAATCCCCCCAGGGGGAGAATTGAATGGAAACGATACGGATTGTCTTTGTTGCCCTATTTGCATGGAACCCTGGTCCTCCGAAGGAAATCATCAAGTCAGTTGTCTTCCTTGTGGACACGTCTATGGTTTCTCTTGCATTGTGAGATGGATTCGACAATGTAGAAAGAATTCCGCGAAGTGTCCTCAATGCAGTAGGAAGTGTTCACTGAAGGATGTCATAAGACTTTATGTTTCACGAATTGTTGTTGATAATGGAGAACAACAAAAGAAATTTCTCTCTCTTCAGTCTGAAAACGAGATTCTTAAGATGAAGATTGCTAATCTGCATGATAAACTTCGCCAAGACGAGGAGAAAATGCGAAAAGAGAAAGAGAAGCCCACTTGCTTGGAGAATGTATCTTTAGGAGAGATGCATAGGAGACCATCTGAAATTACTTTGACGGCGGGCTCTCAAGGACGAACACCATCTGGACACAACTTTGGTTTAAATGTTGGTGTACAAGGATCTCCTCATTGCAGCTTTGCATTAGAGGATGAGTTGGTGGTAGATGGTGCAAGGATTTTGGATATGGATGTTTCTAGTCAAATTCTGATTCTCGCACGAAGGCTTTCTGGAATGGGTGGACTGCATGTTCTTACCAAAATTAGCTTGATGTATCCATATGAACATGAAAATATACACCTTCCTCCTTGCACCAAAGCTATTAGAGACCTGCGTATTTCCCCTTACGCTGGTAAACTTGCACTTTTTGCTTCACTGGGGAAGAAATTATCAATTCTCAGCATGGAAAGCAACAACATTGTTCACACGTATGAATTGCCGGGCCCTGCTTGGTCATGTTCATGGGATCTCAACCGTCCACAAAATATTTATGCTGGATTACAGAATGGCATGCTTTTGGTGTTTGATATGCGCCAAACTGCAAGGCCCATGGAGTCAATAAATGGGCTGACCTGCCACCCTGTTCATACCATACACTCTCTTGTACACAGGCCCCCTCTTCCTTATGATGTTAGAACACTCCTAAGTGCTTCTTCCATTGGCCCAAGTGTGTGGAACACTGGTGGTGGTGTTGGAGAAAGGCCATTTTTGGTTCCTGAAACGGAGAATCAAGGCGTATGTATTTCGCTTGCTCATTGTCCCTCAAATGATGACATTGTTGCTTCATTTCGCCCCAAAGTTCAGATATCTAATGACATTGTCGGTTCTCAACCATCACCCTCACAATCACCCACGGTGCCTGGACAAGGAATACTGGGTTCTCATGTTCATATCAAAAGGGTAGGTAGCAGCTGTTATCAACACATGGGATCTACATCAGCCAATGTAAATGATGTTCGAATGCCGAAGTCTGCAATTATAAGCATAGAGAATGGCAACCCATTGTTTGCATGTGGGGATGAAGTAACCCGTGGGTTGAGCTTGCGGGAGTTGCCATCTTTAAGGGTTGTTCAGAGTCTTAGACCTCATCAGAGCCCCATCCTTGATGTGAAGTATGCACGTTCCCTGGGTACTGGTTTACTTGGTTGTGTAAGTGAGGATAAACTGCAACTTTTCTCTGCAAAGTTCTCATGA 2064 0.4433 MANNHPSYVFYDEEAENEDEETEGDEDEETEGDEDDEDYIPLPRTTAWVSPNSHSSSAQPIAVEEETNMPLHHSENAVEFIQDEETEGDEDDEDYIPPIRTTARVSPNSSSSSAQPIVLEEETNMHLHQISENAVEFIEEEDDRRRGGEATSSSSLKRIEREVIPPGGELNGNDTDCLCCPICMEPWSSEGNHQVSCLPCGHVYGFSCIVRWIRQCRKNSAKCPQCSRKCSLKDVIRLYVSRIVVDNGEQQKKFLSLQSENEILKMKIANLHDKLRQDEEKMRKEKEKPTCLENVSLGEMHRRPSEITLTAGSQGRTPSGHNFGLNVGVQGSPHCSFALEDELVVDGARILDMDVSSQILILARRLSGMGGLHVLTKISLMYPYEHENIHLPPCTKAIRDLRISPYAGKLALFASLGKKLSILSMESNNIVHTYELPGPAWSCSWDLNRPQNIYAGLQNGMLLVFDMRQTARPMESINGLTCHPVHTIHSLVHRPPLPYDVRTLLSASSIGPSVWNTGGGVGERPFLVPETENQGVCISLAHCPSNDDIVASFRPKVQISNDIVGSQPSPSQSPTVPGQGILGSHVHIKRVGSSCYQHMGSTSANVNDVRMPKSAIISIENGNPLFACGDEVTRGLSLRELPSLRVVQSLRPHQSPILDVKYARSLGTGLLGCVSEDKLQLFSAKFS* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01434 687 PANTHER RFWD3 PROTEIN 16 686 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Eupl01g01434 687 Coils Coil 261 288 - -
Eupl01g01434 687 MobiDBLite consensus disorder prediction 1 59 - -
Eupl01g01434 687 Pfam Ring finger domain 180 226 IPR001841 -
Eupl01g01434 687 MobiDBLite consensus disorder prediction 138 160 - -
Eupl01g01434 687 Gene3D - 375 495 IPR015943 GO:0005515
Eupl01g01434 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 304 IPR013083 -
Eupl01g01434 687 SUPERFAMILY WD40 repeat-like 393 682 IPR036322 GO:0005515
Eupl01g01434 687 MobiDBLite consensus disorder prediction 13 38 - -
Eupl01g01434 687 SMART ring_2 180 226 IPR001841 -
Eupl01g01434 687 SUPERFAMILY RING/U-box 179 233 - -
Eupl01g01434 687 ProSiteProfiles Zinc finger RING-type profile. 180 227 IPR001841 -
Eupl01g01434 687 CDD mRING-C3HGC3_RFWD3 179 239 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01434 180 239 C3H Transcription Factor Family AT4G01270 40.984 8.76e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01434 K15691 - ming:122057878 654.44