Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01428 ATGGCTGGCAAGGAGGAGAATCGTATATTTGTTGGAGGTTTGTCGTGGGACACTACGGATCGGCAGCTCGAAGATGCTTTCATACGTTACGGAAAAATCCTCGAGGCGCAGATCATGTTGGACAGAGATACAGGCCGTCCTCGTGGATTTGGATTTGTGACCTTTGCAGATCAACGGGCAATGGAAGACGCAATCAGAGAGATGCATGGCAGGGAGCTTGGTAGTCGGGTTATCTCAGTGAACAAGGCCCAGCCCAAGATGGGGGGTGATGATTCAGGCTATGGTTATGGGGGAGGCTACTCGTCAGGTGGCAGGGGCAGCTATGGGGGGGGAGGAGATAGAGCTGCAGGAAGATCTGACTGCTTCAAGTGCGGGCGCCCTGGGCATTGGGCCCGAGAATGTCCTTCGGCTGGTGGCGGCGGCAGTGGTGGTGGTGGTGGAAGGTTCTCTTCGCGTTCTAGGTTCAGTGGTGGTGGCGGCCGCGGGGACCGGTTTGGAGGAGACCGTTACGGAGATCGCTACGCGGATGATCGATATGATGGTGGACGCTATGGAGACAGGGACCGTGTGGAGAGCAGAGACAGCAGGTATGGGAGCGGGGGCGGGGGCGGGGGCCGTGATCGCTATGCAAGTGACAGGTACCCACCTAGTGGGGATCGGTTTGGAGGAGGCGATCGATATGGGGGTTCTGACCGATACCCTCAGAATGGATATGGCAAGGACAGGGGATATGACAGGGATGGAGGCCCAAGGGGTGGTGGCGATAGGTATGGGAGTGGAGGGCCAGCACGCTATGAAGGAGGAAGCTACAGGGATAGGCCAGCTCCTTATGACCGCCCCAGCAGGGGAGGGGGGGGAGGGCGTCCTTCATCCTATGACGACCGCTATTAA 891 0.5825 MAGKEENRIFVGGLSWDTTDRQLEDAFIRYGKILEAQIMLDRDTGRPRGFGFVTFADQRAMEDAIREMHGRELGSRVISVNKAQPKMGGDDSGYGYGGGYSSGGRGSYGGGGDRAAGRSDCFKCGRPGHWARECPSAGGGGSGGGGGRFSSRSRFSGGGGRGDRFGGDRYGDRYADDRYDGGRYGDRDRVESRDSRYGSGGGGGGRDRYASDRYPPSGDRFGGGDRYGGSDRYPQNGYGKDRGYDRDGGPRGGGDRYGSGGPARYEGGSYRDRPAPYDRPSRGGGGGRPSSYDDRY* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01428 296 FunFam glycine-rich RNA-binding protein RZ1C 1 115 - -
Eupl01g01428 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 78 IPR000504 GO:0003723
Eupl01g01428 296 SUPERFAMILY Retrovirus zinc finger-like domains 102 140 IPR036875 GO:0003676|GO:0008270
Eupl01g01428 296 CDD RRM2_NsCP33_like 8 83 - -
Eupl01g01428 296 MobiDBLite consensus disorder prediction 238 252 - -
Eupl01g01428 296 ProSiteProfiles Zinc finger CCHC-type profile. 121 136 IPR001878 GO:0003676|GO:0008270
Eupl01g01428 296 Gene3D - 1 116 IPR012677 -
Eupl01g01428 296 SUPERFAMILY RNA-binding domain, RBD 4 114 IPR035979 GO:0003676
Eupl01g01428 296 SMART rrm1_1 8 81 IPR000504 GO:0003723
Eupl01g01428 296 PANTHER SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL 4 285 - -
Eupl01g01428 296 MobiDBLite consensus disorder prediction 135 296 - -
Eupl01g01428 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Eupl01g01428 296 SMART c2hcfinal6 120 136 IPR001878 GO:0003676|GO:0008270
Eupl01g01428 296 MobiDBLite consensus disorder prediction 165 195 - -
Eupl01g01428 296 Pfam Zinc knuckle 121 136 IPR001878 GO:0003676|GO:0008270
Eupl01g01428 296 Gene3D - 117 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01428 Eupl-Chr1 34789139 34798711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01428 9 86 C2H2 Transcription Factor Family AT2G19380 39.744 2.15e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01428 - - nnu:104604541 324.324