Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01423 ATGTTCCTTAACTCCTGCATTCTCCTAATTCGTCTCCTAAGCTTCTTTACACCTGTTATCAGAGCAACCCACTACAACCTCACGCTTCCCCACCAACATCCCAACCCTGAAGCAGTTGTTCAACAAGTTCAACGGAAAGTGAATGTGTCCATCTCCAGGAGGCAAATGTTGGGAATTTACGAGAATGACCAGTTGTCTTGTTTGACCGGTAACCCCATCGACGACTGTTGGAGGTGCAATGCTAACTGGGAAGCTAACCGTCAACAGTTAGCCGATTGTGGGATTGGGTTCGGACAGGACGCACTTGGCGGGAAGGGGGGTCAGATTTATCTTGTCACCGATTCGTCTGATAATGACGCGGTCAATCCTACGCCGGGGACGTTACGATACGCCGTGATCCAAACGGAACCTCTCTGGATTATCTTCTCAGGCAACATGCTTATAAAACTCAAAGAAGAGCTCATCTTTAATAGCTTCAAGACCATCGACGGCCGCGGAGCTAATGTTCATATAGTAGGAGGGGGATGTATCACCCTCCAGTACGTTAGCAATATAATCATCCATAACATTCATATCCACCACTGCGTCCCTTCTGGAAATACTATGGTGCGCTCTAGTCCTACACATTACGGGCATCGCACGAAATCAGACGGCGACGGGATCTCCATCTTCAGCTCGAGAAAAATATGGATTGACCACTGTTCTCTTTCCTACTGCACGGACGGTCTGATCGACGCCATAATGGGGTCCACGGGAATTACAATTTCAAATAGCTTCTTCTCGCATCACAATGAGGTGATGCTGCTTGGTCACAACGACAATTATCTACCTGACACGGGGATGCAGGTGACAATCGCATTCAACCACTTCGGTGAGGCGCTGGTACAGAGAATGCCCAGGTGCCGACATGGCTACATCCACGTCGTCAATAACGATTTCACCCAGTGGGAAATGTACGCCATTGGTGGAAGCGCGAGCCCCACCATCAATAGCCAAGGCAACCGCTACACTGCGCCTACGGATCCCAACGCCAAAGAGGTGACGAAGCGGGTGGAGACGGACGAGAAAGAATGGAGTGATTGGAATTGGAGGACGGAAGGGGATATGATGGTGAACGGAGCGTTCTTTGTGCCGTCCGGAGAGGGGCTTCAGGATAAGTACGTAAAGGCGTCTAGTGTCGATCCGAGATCCGCTGCGCTCATTGACCAGCTAACCATGAATGCCGGTGTCTTCGGTGAAAGCAGGGACAACGGTGCGAGCGTAACTTATCCGGGATTCAACGGTGGGAGTAGTAGCACCGGCAGCATAGGCACAGGGGTGGGGTCCGCCGATGGTGGTGGGGAAGGAGGAGCTGCAAACTACTTTGGAATAGTATTTGGGAGCGGTGCACCACCGTCACCACCGTCACACCCTATTTTCTTGTCTTTTCTAATTATGTTTTCTTTGTTGATATTGTGCACCACATCCACCCAAATTTCTCCTCTATTATTATTATTTTTATAA 1503 0.4983 MFLNSCILLIRLLSFFTPVIRATHYNLTLPHQHPNPEAVVQQVQRKVNVSISRRQMLGIYENDQLSCLTGNPIDDCWRCNANWEANRQQLADCGIGFGQDALGGKGGQIYLVTDSSDNDAVNPTPGTLRYAVIQTEPLWIIFSGNMLIKLKEELIFNSFKTIDGRGANVHIVGGGCITLQYVSNIIIHNIHIHHCVPSGNTMVRSSPTHYGHRTKSDGDGISIFSSRKIWIDHCSLSYCTDGLIDAIMGSTGITISNSFFSHHNEVMLLGHNDNYLPDTGMQVTIAFNHFGEALVQRMPRCRHGYIHVVNNDFTQWEMYAIGGSASPTINSQGNRYTAPTDPNAKEVTKRVETDEKEWSDWNWRTEGDMMVNGAFFVPSGEGLQDKYVKASSVDPRSAALIDQLTMNAGVFGESRDNGASVTYPGFNGGSSSTGSIGTGVGSADGGGEGGAANYFGIVFGSGAPPSPPSHPIFLSFLIMFSLLILCTTSTQISPLLLLFL* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01423 500 SMART amb_all 145 342 IPR002022 -
Eupl01g01423 500 PANTHER PECTATE LYASE 18-RELATED 26 411 IPR045032 GO:0030570
Eupl01g01423 500 Pfam Pectate lyase 151 334 IPR002022 -
Eupl01g01423 500 FunFam Pectate lyase 70 412 - -
Eupl01g01423 500 SUPERFAMILY Pectin lyase-like 60 392 IPR011050 -
Eupl01g01423 500 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Eupl01g01423 500 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Eupl01g01423 500 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Eupl01g01423 500 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Eupl01g01423 500 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Eupl01g01423 500 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Eupl01g01423 500 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Eupl01g01423 500 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Eupl01g01423 500 Gene3D - 70 412 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01423 Eupl-Chr1 34719757 34724124 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01423 1 492 Polysaccharide Lyase AT3G53190 64.980 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01423 K01728 - ming:122069475 757.673