Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01415 ATGGAAAGCGTTTTCGAGCCCCAATTGCCTTCTCATGGTTTCGAAGTTATCGAATCCTCTGAGAAATACGAGTCACTGAGAGAGATGGGATATGAGCATTTCGGGTGCACACACTACAGAAGGAGATGCAAGATCAGGGCACCTTGTTGCAACGAGATCTTCGATTGTCGGCATTGCCATAACGAAGCAAAGAATTCGATGGAAGTTGATCCTCTTGATCGGCACGATATTCCTCGCCATGAAATTAAAAAGATCATCTGTTCCCTGTGTGACACAGAACAAGATGTTCAACAAAATTGTATTAATTGTGGGGTTTGCATGGGGAAATACTTTTGTGGGAAATGCAAGTTCTTCGATGATAATGTTTCGAAGAATCAATACCACTGCGATGGATGTGGAATCTGCAGAACTGGAGGCGAGGAGAACTTCTTCCACTGTGATAAATGTGGATGTTGTTATGCGACGTCATTGAAGGATACACACCGTTGTGTGGAAAGAGCAATGCACCACAACTGCCCTGTATGCTTTGAGTATCTCTTTGATTCAACGAAAGACATTAGTGTCTTACAATGCGGACACACGATACATTTTGACTGCTTGAAAGAGATGGAGCTGCATTTCAAGTTTGCATGCCCTGTTTGCTCAAGATCAGTCTGTGATATGTCCACAGTGTGGGAAAAGCTTGATCAAGAGGTCGCTTCAACACCTATGCCCGAAATTTACCAGAACAAGATGGTTTGGATCCTCTGCAATGACTGTGGGACAACATCTGAGGTCCATTTCCATATCGTGGCACACAAGTGCCTAAGCTGCAAGTCCTACAACACTAGGCTGACACGAGGTGCTGCTGCTACATGCTCATCGAGAAGCTAA 873 0.4444 MESVFEPQLPSHGFEVIESSEKYESLREMGYEHFGCTHYRRRCKIRAPCCNEIFDCRHCHNEAKNSMEVDPLDRHDIPRHEIKKIICSLCDTEQDVQQNCINCGVCMGKYFCGKCKFFDDNVSKNQYHCDGCGICRTGGEENFFHCDKCGCCYATSLKDTHRCVERAMHHNCPVCFEYLFDSTKDISVLQCGHTIHFDCLKEMELHFKFACPVCSRSVCDMSTVWEKLDQEVASTPMPEIYQNKMVWILCNDCGTTSEVHFHIVAHKCLSCKSYNTRLTRGAAATCSSRS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01415 290 Pfam Zinc-ribbon 219 277 IPR039512 -
Eupl01g01415 290 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 165 216 IPR013083 -
Eupl01g01415 290 Gene3D - 243 286 - -
Eupl01g01415 290 ProSiteProfiles Zinc finger CTCHY-type profile. 107 171 IPR017921 -
Eupl01g01415 290 ProSiteProfiles Zinc finger RING-type profile. 172 215 IPR001841 -
Eupl01g01415 290 ProSiteProfiles Zinc finger CHY-type profile. 29 105 IPR008913 GO:0008270
Eupl01g01415 290 SUPERFAMILY Zinc hairpin stack 108 165 IPR037275 -
Eupl01g01415 290 Pfam CHY zinc finger 36 117 IPR008913 GO:0008270
Eupl01g01415 290 SUPERFAMILY RING/U-box 170 221 - -
Eupl01g01415 290 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 21 280 - -
Eupl01g01415 290 SMART ring_2 172 214 IPR001841 -
Eupl01g01415 290 Pfam Ring finger domain 171 214 IPR001841 -
Eupl01g01415 290 SUPERFAMILY CHY zinc finger-like 32 107 IPR037274 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01415 Eupl-Chr1 34626805 34630860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01415 25 281 C2H2 Transcription Factor Family AT3G18290 37.405 1.42e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01415 K10144 - msin:131251270 540.421