Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01411 ATGGAGGTTCCAGAGGAAGTCATGCCCTCTTCTAACGACCATTCTTACATCGTTAAGGGCAAACGTACCAAGCGCCATAGACCTTCCTCCCCTCTTTCCGTTGCCATGACTACTAGTTCTTCTAGCGGTGGAGGAGCTGATCGTAGTTTCCCATCCCCGACTTCCTCCGCGGAATTTGCCGAGAGTACCGAGGAAGAAGAGGACATGGCCAATTGTCTTATTCTTCTGGCTCGAGGACATAACCGAGACTGGGAAGGTTCGAAGCGAATTGAAGAAGGTGGAGGTTCAGAGAAGTTTAGTAGCCGAAGATTCACGGAGGCAGCTGTCACAACAACTAATGGGAAGGCAGGATTCTATGTCTACGAGTGCAAGACGTGTAACCGATGTTTCCCTTCGTTCCAAGCGTTAGGCGGACACAGAGCGAGTCACAAGAAACCTAAAGCCATGGTTCATGAAGAGAAGAAAGCGTTGGTGTTGTTGGAGGACGAGAGCCAATTCAATCACAATCACAATCACAATCACAATAGCCCACCCCATCTTCTCTATAGTAATAATAAGTCCAGGGTCCATGAATGTTCTGTATGTGGTTCTGAATTCTCATCGGGACAAGCCTTAGGTGGTCATATGAGGCGACACAGGACGTCAACGACCACAACCACAACCATGTCTGAGTCTCAAGATCAAAAGAAACCAAGAAACGTCTTACAGTTGGATCTCAACCTTCCAGCTCCGGAAGACGATCGGGACTCAAATAAATTCTCCTTCGCTTCAAAACAACAACCTCTCGTCTTCTCCGCAACTGCTCTGGTCGATTGCCATTACTAG 825 0.48 MEVPEEVMPSSNDHSYIVKGKRTKRHRPSSPLSVAMTTSSSSGGGADRSFPSPTSSAEFAESTEEEEDMANCLILLARGHNRDWEGSKRIEEGGGSEKFSSRRFTEAAVTTTNGKAGFYVYECKTCNRCFPSFQALGGHRASHKKPKAMVHEEKKALVLLEDESQFNHNHNHNHNSPPHLLYSNNKSRVHECSVCGSEFSSGQALGGHMRRHRTSTTTTTTMSESQDQKKPRNVLQLDLNLPAPEDDRDSNKFSFASKQQPLVFSATALVDCHY* 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01411 274 MobiDBLite consensus disorder prediction 30 59 - -
Eupl01g01411 274 SUPERFAMILY beta-beta-alpha zinc fingers 120 149 IPR036236 -
Eupl01g01411 274 SUPERFAMILY beta-beta-alpha zinc fingers 187 215 IPR036236 -
Eupl01g01411 274 ProSitePatterns Zinc finger C2H2 type domain signature. 192 212 IPR013087 -
Eupl01g01411 274 Pfam C2H2-type zinc finger 189 214 - -
Eupl01g01411 274 Pfam C2H2-type zinc finger 120 146 - -
Eupl01g01411 274 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Eupl01g01411 274 Gene3D Classic Zinc Finger 164 240 - -
Eupl01g01411 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Eupl01g01411 274 MobiDBLite consensus disorder prediction 1 63 - -
Eupl01g01411 274 SMART c2h2final6 190 212 IPR013087 -
Eupl01g01411 274 SMART c2h2final6 121 143 IPR013087 -
Eupl01g01411 274 MobiDBLite consensus disorder prediction 210 233 - -
Eupl01g01411 274 PANTHER ZINC FINGER PROTEIN ZAT5 37 263 - -
Eupl01g01411 274 ProSiteProfiles Zinc finger C2H2 type domain profile. 190 217 IPR013087 -
Eupl01g01411 274 MobiDBLite consensus disorder prediction 203 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01411 Eupl-Chr1 34578058 34579014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01411 1 274 C2H2 Transcription Factor Family AT5G04390 38.482 7.29e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl01g01411 zf-C2H2_6 8.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01411 - - nnu:104604563 306.99