Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01407 ATGGACCGGGACTGGGGAGCAAAGCCTGGTGGCGGAGGCGCGGCCTCCGCTCAGAACGAAGCCATCGACAGGAGAGAGAGACTGAGAAGGCTAGCCCTTGAGACCATCGATCTCGCTAAGGACCCCTATTTCATGCGTAATCATCTCGGAAGCTACGAGTGTAAGCTTTGCCTGACTTTACACAACAACGAGGGCAATTACTTGGCTCACACACAGGGGAAGCGCCACCAGACCAACTTGGCCAAGAGAGCTGCCCGCGAGGCAAAAGAAGCCCCTGTTCAGCCCCAGCCCCACAAGCGAAAGGTCTCCCTCCGCAAATCAGTCAAGATCGGGAGGCCTGGATACCGGGTAACAAAGCAATATGATCCAGAGACAAAGCAACGATCTCTTCTCTTCCAGATTGAATATCCTGAAATTGAAGACCTTGCAAAGCCACGACACCGTTTTATGTCATCGTTTGAGCAGAGGGTTCAATCCTGTGATAAGAGGTATCAGTATCTTCTGTTTGCCGCTGAACCATATGAGATCATTGCTTTCAAGGTTCCTAGCACGGAGATTGACAAATCCACACCCAAGTTCTTCTCACATTGGGATCCAGACTCGAAAATGTTCACGTTGCAGTTATATTTCAAAATCAAACCACCGGATGCGAATAAACCTCAACCTGTACCTGTGCCTGTTGCCAATGGAACATCAGCTCCTGGTGTCCCCCCAAGGTCCTTGCCGCCACCGCCACCACCCCCACAAGGACTTCCTCCTGGTGCTCCTATTCCAAATCCTCCCAGAGGTCCACCACCTACAGTTCCTGGGTCTGCACCCCCACCCCCTCCTCCACCAACAGAAAACGGCCCTCGACCCATGCCTCCTGGTGGAAATCTGCCGGTCCCACCACCACCCCCAGTTGGAAGTGGTACAATGGCAAACTTTACTCCAGGTACTCAGATTGGTCGGCCACCATTGATGATGCCACCACAAGGTTTTCCGGGCCAACAGATTCAGGGCCAAGGGTTTCGTCCCGCCCCACCTCCTCCGAACATGGGACAGCAGCTCCCTAGGCCGCCTATGTCGTAG 1071 0.5378 MDRDWGAKPGGGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPVQPQPHKRKVSLRKSVKIGRPGYRVTKQYDPETKQRSLLFQIEYPEIEDLAKPRHRFMSSFEQRVQSCDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKIKPPDANKPQPVPVPVANGTSAPGVPPRSLPPPPPPPQGLPPGAPIPNPPRGPPPTVPGSAPPPPPPPTENGPRPMPPGGNLPVPPPPPVGSGTMANFTPGTQIGRPPLMMPPQGFPGQQIQGQGFRPAPPPPNMGQQLPRPPMS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01407 356 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Eupl01g01407 356 Gene3D - 94 217 - -
Eupl01g01407 356 SUPERFAMILY beta-beta-alpha zinc fingers 48 83 IPR036236 -
Eupl01g01407 356 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Eupl01g01407 356 SMART CactinC_cactus_3 89 217 - -
Eupl01g01407 356 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Eupl01g01407 356 MobiDBLite consensus disorder prediction 1 21 - -
Eupl01g01407 356 MobiDBLite consensus disorder prediction 337 356 - -
Eupl01g01407 356 Gene3D Classic Zinc Finger 46 89 - -
Eupl01g01407 356 FunFam Splicing factor 3a subunit 2 94 218 - -
Eupl01g01407 356 MobiDBLite consensus disorder prediction 236 304 - -
Eupl01g01407 356 Pfam Zinc-finger of C2H2 type 52 76 - -
Eupl01g01407 356 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 346 - -
Eupl01g01407 356 MobiDBLite consensus disorder prediction 216 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01407 Eupl-Chr1 34508421 34518068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01407 1 221 C2H2 Transcription Factor Family AT2G32600 87.330 1.01e-134 383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01407 K12826 - nnu:104604567 434.491