Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01406 ATGCATCCGTCGTGTCCGCCTCGACTGGGAACCTCGACCTTCCCACTCTCGGACCTTCAATTGCTCGTCTCCGGCAACAACATCAACCCCATCTTCCCTGAATCTCCTCTCTCCTCTCTTCCTCCTCCTCCGCCTCCACCTTCTCCTCCGCTTCCTAGGTTTAGGGTTTCCGCTTCTAATGCCCACACACTAAACGCAACCCTAAACCCTAACACAATTCCTCAATACCGTAAGCGCCCAAACACAAACTTCAATCCCAACCCCACTCACCGGCAAAAGATCCATGTACAACAACAACGACAACGACGACAAGAGGAAGAATACCATTTCGAATATGAATCCAACAACGGCGACGATGAGGAATATGAAAATGCAGAAAAAGAAGAGCTCGGAGAAGGAGAGGAAGAAGACGTAGAAGAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGAGGAGGAGGAAGTTTCTTGCTCGTCCTCTGCACCTTCTTTCGTTAACAAAAGCAACAACGGAAGGAGGGAAAAGCAGAAGCTTTCCGCTATTGACATGGCCTCCGTAAAACACTTACTGGAGACAGTGGTGGCACAGCAGCAGAGGTTCTTCATGGACCTCCTCGAAACCCTAGAGAGAAATGAGCAACATAGAGAGCGGATCCGCGCTGATAGGGAGGAGAAATGGCGTGCTGAGGAGAGGACCCACCGACGACTCCTCGACAATGCTATGCTCCTCCTTACTGAAACCCTGCTCCGCAGTGGTGGTTGCCATGGGAATAGCAGGCAGTTTGATCAGGAGGAAGAGGAGGAGAAAAGTGAGAAAAAGAAGAAGCGGAGTAAGAATTGGAAGAGGGGGGAGGTTTTACGTTTGATACAGCTGAGGGGGGAGATGAAGCAGAGGTTCTCTAATACTAGTCGAAGAGGATCTGTTTGGGATGAGCTCGCAGAGGGTCTGGCCTCCTGCGGCATTAGGAGAGACGGAAAGCAATGCAGGGAGAAATGGGATAAATTGATGTCATCTTACAAAGATGTTGTTGATGGAAAGAAAGATCCTGCTGACCTTCCCTACTTCTCCGAGTTGCACAGTGTTGTTGGCTTTGGCTACGGTGAGCTCGAGTTTTGA 1122 0.4964 MHPSCPPRLGTSTFPLSDLQLLVSGNNINPIFPESPLSSLPPPPPPPSPPLPRFRVSASNAHTLNATLNPNTIPQYRKRPNTNFNPNPTHRQKIHVQQQRQRRQEEEYHFEYESNNGDDEEYENAEKEELGEGEEEDVEEEEEEEEEEEEEEEEEEVSCSSSAPSFVNKSNNGRREKQKLSAIDMASVKHLLETVVAQQQRFFMDLLETLERNEQHRERIRADREEKWRAEERTHRRLLDNAMLLLTETLLRSGGCHGNSRQFDQEEEEEKSEKKKKRSKNWKRGEVLRLIQLRGEMKQRFSNTSRRGSVWDELAEGLASCGIRRDGKQCREKWDKLMSSYKDVVDGKKDPADLPYFSELHSVVGFGYGELEF* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01406 373 CDD GT1 286 344 - -
Eupl01g01406 373 Pfam Myb/SANT-like DNA-binding domain 280 362 IPR044822 -
Eupl01g01406 373 ProSiteProfiles Myb-like domain profile. 274 338 IPR001005 -
Eupl01g01406 373 MobiDBLite consensus disorder prediction 32 175 - -
Eupl01g01406 373 Coils Coil 206 233 - -
Eupl01g01406 373 Gene3D - 282 343 - -
Eupl01g01406 373 MobiDBLite consensus disorder prediction 58 94 - -
Eupl01g01406 373 PANTHER FI21293P1 97 362 - -
Eupl01g01406 373 MobiDBLite consensus disorder prediction 35 53 - -
Eupl01g01406 373 MobiDBLite consensus disorder prediction 256 280 - -
Eupl01g01406 373 Coils Coil 124 160 - -
Eupl01g01406 373 MobiDBLite consensus disorder prediction 261 276 - -
Eupl01g01406 373 MobiDBLite consensus disorder prediction 112 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01406 Eupl-Chr1 34506639 34508298 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01406 282 363 Trihelix Transcription Factor Family AT1G33240 27.059 1.27e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Eupl01g01406 Myb_DNA-bind_4 9.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01406 - - smo:SELMODRAFT_428458 193.356