Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01403 ATGCCGTCGCCACTGCGCTTCCTCTTGTCAGCATTGCTGCTACTTGTGCTTATCTTGCCTGATGTCCAGGCCTCCTTCCATCACAGATGGAGAGGATATGGGAACCGTCGCAATGGCAAGCCTCATTGGATTCGATCCCCTGGCAGATACCCCAGACCTCGGTACCATGGCAAAAATACCGGGCATAATCGTCCCAACTTTAAACCTGGGCCATGGAACTCCGCTCATGCTACTTTCTATGGAGGGAGCGATGCCTCGGGAACAATGGGTGGAGCTTGTGGTTATGAAGATTTGCACAGCCAAGGATATGGCTACCAGACTGCAGCATTGAGCACAGCTTTGTTCAACACAGGGTTGACATGCGGAGCATGTTTTGAGATCAAGTGTGTCAACGATAAAGAATGGTGCAAGCTGGGGCAACCCTCTATCTTTGTCACAGGTACTAACCTTTGTCCACCCAACTACTACCTTCCGAGCAACAACGGAGGATGGTGCAACCCACCACTGGCACACTTTGATCTTGCCCAACCGGCATTCCTTCAGATAGCCGAGTACAAGGCCGGTATTATTCCGGTTCAATATCGCAGGGTGCCTTGCAAGAAGCAAGGAGGGATTCGGTTTACGATTACGGGAAATCCTTATTTCAACCTGGTCCTGGTATGGAATGTGGGAGGTGCTGGAGATGTCAAAAGTGTGAAGGTGAAGGGAAACAAGTCGGGGTGGATGAACATGAAACGTAATTGGGGTCAGAAATGGGAAGTCGACACCGTGTTGCAAGGCCAGTCGCTGACTTTCCGAGTCACCGCAAGCGATGGAAAAACCTCCACTTCATGGCACGTCGCGCCACAGAACTGGCAGTTCGGCCAGACCTTCGAAGGCAAGAACTTGAAGTAG 894 0.5134 MPSPLRFLLSALLLLVLILPDVQASFHHRWRGYGNRRNGKPHWIRSPGRYPRPRYHGKNTGHNRPNFKPGPWNSAHATFYGGSDASGTMGGACGYEDLHSQGYGYQTAALSTALFNTGLTCGACFEIKCVNDKEWCKLGQPSIFVTGTNLCPPNYYLPSNNGGWCNPPLAHFDLAQPAFLQIAEYKAGIIPVQYRRVPCKKQGGIRFTITGNPYFNLVLVWNVGGAGDVKSVKVKGNKSGWMNMKRNWGQKWEVDTVLQGQSLTFRVTASDGKTSTSWHVAPQNWQFGQTFEGKNLK* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01403 297 Gene3D - 203 296 IPR036749 -
Eupl01g01403 297 PRINTS Expansin/Lol pI family signature 111 129 IPR007118 GO:0005576
Eupl01g01403 297 PRINTS Expansin/Lol pI family signature 71 86 IPR007118 GO:0005576
Eupl01g01403 297 PRINTS Expansin/Lol pI family signature 279 293 IPR007118 GO:0005576
Eupl01g01403 297 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Eupl01g01403 297 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Eupl01g01403 297 PRINTS Expansin/Lol pI family signature 187 203 IPR007118 GO:0005576
Eupl01g01403 297 PANTHER EXPANSIN-A15 65 295 IPR002963 GO:0009664
Eupl01g01403 297 Gene3D - 57 200 IPR036908 -
Eupl01g01403 297 FunFam Expansin 204 296 - -
Eupl01g01403 297 PRINTS Expansin signature 102 116 IPR002963 GO:0009664
Eupl01g01403 297 PRINTS Expansin signature 129 140 IPR002963 GO:0009664
Eupl01g01403 297 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Eupl01g01403 297 PRINTS Expansin signature 143 153 IPR002963 GO:0009664
Eupl01g01403 297 PRINTS Expansin signature 203 215 IPR002963 GO:0009664
Eupl01g01403 297 PRINTS Expansin signature 162 179 IPR002963 GO:0009664
Eupl01g01403 297 PRINTS Expansin signature 179 192 IPR002963 GO:0009664
Eupl01g01403 297 PRINTS Expansin signature 250 271 IPR002963 GO:0009664
Eupl01g01403 297 PRINTS Expansin signature 279 295 IPR002963 GO:0009664
Eupl01g01403 297 SUPERFAMILY Barwin-like endoglucanases 71 222 IPR036908 -
Eupl01g01403 297 Pfam Expansin C-terminal domain 205 282 IPR007117 -
Eupl01g01403 297 MobiDBLite consensus disorder prediction 47 61 - -
Eupl01g01403 297 CDD DPBB_EXPA_N 71 199 - -
Eupl01g01403 297 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 214 293 IPR007117 -
Eupl01g01403 297 SMART dpbb_1 107 194 IPR007112 -
Eupl01g01403 297 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 90 204 IPR007112 -
Eupl01g01403 297 SUPERFAMILY PHL pollen allergen 201 293 IPR036749 -
Eupl01g01403 297 MobiDBLite consensus disorder prediction 41 68 - -
Eupl01g01403 297 Pfam Lytic transglycolase 107 194 IPR009009 -
Eupl01g01403 297 FunFam Expansin 61 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01403 Eupl-Chr1 34459356 34462284 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01403 67 297 Expansin Gene Family AT3G55500 69.264 6.76e-124 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01403 - - ming:122078160 416.387