Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01396 ATGGGCCAGATCCAGTACTCGGAGAAATACTTCGATGACACTTTCGAATACAGGCACGTTGTTCTCCCTTCTGAAGTGGCGAAACTTCTCCCGAAGAATCGGCTTCTCTCCGAGAATGAATGGAGAGCGATCGGGGTTCAGCAGAGCCGCGGGTGGGTCCACTACGCGATCCATCGCCCTGAGCCACACATCATGCTCTTCAGGAGGCCTCTTAACTACCAGCAGCAGCAGGAGAACCAGGCTCAGCAAATTCTCGCCAAGTGA 264 0.5417 MGQIQYSEKYFDDTFEYRHVVLPSEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQAQQILAK* 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01396 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 18 32 IPR000789 GO:0016538
Eupl01g01396 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 40 54 IPR000789 GO:0016538
Eupl01g01396 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 3 17 IPR000789 GO:0016538
Eupl01g01396 87 PRINTS Cyclin-dependent kinase regulatory subunit signature 55 69 IPR000789 GO:0016538
Eupl01g01396 87 SMART CKS_2 3 72 IPR000789 GO:0016538
Eupl01g01396 87 Pfam Cyclin-dependent kinase regulatory subunit 4 70 IPR000789 GO:0016538
Eupl01g01396 87 SUPERFAMILY Cell cycle regulatory proteins 1 81 IPR036858 GO:0016538
Eupl01g01396 87 FunFam Cyclin-dependent kinases regulatory subunit 1 84 - -
Eupl01g01396 87 Gene3D - 1 84 IPR036858 GO:0016538
Eupl01g01396 87 PANTHER CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 3 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01396 Eupl-Chr1 34381711 34382187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01396 1 82 Core Cell Cycle Gene Families AT2G27970 91.463 2.68e-52 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01396 K02219 - ath:AT2G27960 169.474