Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01394 ATGGCGAACGGCACCGATTCGGAGGAGTTCGTGTTGTTGTCGGGGCCTCGAACTGGTCTGAAACGCGAGTTTTCTTTCGCCGTGAAGGTCCAATCTGAGCTGTCTGGTTCGCTTGGTCGCACTCGATCAAGAAAGTTTCAGAATAGCCCTTCTAGTAATGGAGTTTTGGAGAATTTGAGCAACAAGAGACTTAAGAGCTCTTGTGCTAAGAAAGAACCGAAGAACGATGTGGAGAAAGTTCCGACCGAGGAGGAGGCCCAGAATGATTCGGCGAAATCTCCAAGCGGGGAGGAACCTAAGAGCGATCTGGCAAAATCGACGAGCGAGGAGGAGCTCAAGAGTGGCGCGTTAAAATCTTCAAGCGCAGAGGACCCCAAGAACCATAGAGCAAAATCTCCCAGAGAAGAGGGAAGTGGCGAGAAAACCGGAGTCATGATTGGTGACAATAGCGAGGTACCGAATGCTTTACCGAAGAAACCCTTGAGGCGGTTAACTCGTTCAGCTTCGAAACTTAATGCGGAGCGAATGGTGACTAATGACAATAGTGAGGTACGGAATGACTCGGTGAAATCTTCAAGCATGGAGGAACTCGAAAGCAATCTGGCAAAATTAACGAGGGAGGAGCCCAAGAATGACTTTTTAAAATCTCTAAGCTCGGAGGATCCCAAGAACAATGTGGCAAAATCGCCCAGAGAAGAGGGAACTAACGTGGAAACCCCAATATTGATTGACGACACTATCAATGAACAGAATGCTTTACTGGAGAAACCATTGAGGCGGTTTACTCGTTCTGCTTTGAAGCATAAGGTAGAGCCCGTGGTGCTTGCTGACAATAGCAAGGTTCAGAATGCTTTACCTGAGAAACCCCTGACACGGTTTAGTTCAGCTTTGGAACCTAAGGGAGAGCCAATGGTGGTTGATGACAACAGCAAGGTACAGAATGTTTGGGTGAAATGTCCAAGCAAGAAGGAACCCAAGGGTGATCTGGCTAAACCAACTAGCGAGGAGGAGCAAAAGATTCATTCTTTAAAATCTCCAAGCGGGGAGGAACCTATGAACAATGGGGCAAAATCTCCTAGAGAAGAGGACACTAATGTGGAAACCCCAATCGTGATTGATAAGAATAGCGAAGTACAGAATCATTCAACTTCAAAACCCAAGGCAGAGTCAATTGATAACAATAGCGAGGTACATAATACTATACCTGAGAAGGCCCTGAGACGGTTTACTCGTTCAGCTTTGAAACCTAAAGTAGAGCCAATGGTGATTGATGAAAATAGCGAGGTACAGAATTCTTTACCGGATACTCCCCTTAGGCGGTTTACTCGCTCAGCTTTGAAACCAAAGGCTGAGCGGATGGAGATCTTGGCAATGACCACAACGAGTGGCAATTCTATTGTATCTGAAGATGCTTGCAAGAATGAAGCAATTGCAAAAGGTGATGGGAGAGCGACCAATGTGGTTAGCTCTTTTAGAACACCTCCAAAGCAGAAGCTTGAAATGAAAATGTCAAAAAAGATTGCCGTGACCAAGTTTCCAGCCAAGGTCAAGGAGCTCTTTGAGACTGGGATGCTTGAGGGATTGCATGTTAAGTACATCTTCCGGGGCAAGAAGAAAGGAGGACTTCAGGGAACGATAAAAAATCGAGGGATCTTGTGTTCCTGTTCTTTGTGCAAAGGGTGCAAAGTTGTTACGCCCTTCCAATTTGAGCAGCATGCAGGTAGTACAAATAAGCATCCTGCCGATCATATTTGCTTAGAGAATGGGAATAGCCTCCGTGAAGTGTTGAATGCATGCAAGGACGCAACTTTGGACACATTGGAAACAACAATTCAAAGAGCAATATGTTCTACACCTATAAAAAATGCTACTATCTGTTCAAATTGCAAAGGACCTCTTCCTGCATTGTTCACCAAAAGGAGAATGCTACTATGCAATTCGTGCCTGGAATCCGAGAAATCCCAGGCAAACCCAGCACATGCAACTGGAGCTGATGCTAGGTTGTCGAAGTCAGTTGTGACTCCAAAATCCTTGGACGGTGCTCCAAATTGTATCTCACCGCAAAATAAGAGTAGTCAAGGGAAGCTAACAAGAAAGGATTTGCGATTGCATAAGTTGGTCTTTGAGGAGGATGGCTTACCTGATGGAACAGAACTAGCGTATTATGTCCGTGGACAGAAATTGCTTGAGGGTTATAAAAAGGGGTTTGGAATATTCTGTCGTTGCTGCAACAGTGAGGTCAGCCCTTCACAGTTTGAAGCTCATGCTGGTTGGGCTTCACGCCGGAAACCTTACCTACATATTTACACCTCCAATGGGGTGTCGCTTCACGAATTGTCATTATCTCTATCAAAAGGTCGTAAATTTTCTGCCAATGACAATGATGACCTCTGCAGCATTTGTGCAGACTTTGGGGATCTTTTGCTTTGTGATGGATGCCCCAGGGCTTTTCATAAAGATTGTGTGGGTCAAGCAAGCATCCCACGTGGTGATTGGTATTGTCCCTATTGCCAAGATATGTTCCAAAGAGACAAATCTTGTGCAAATAATGCCAATGCAAAGGCAGCTGGGAGAGTTTCTGGAGTTGACCCTATAGAACAGATATCCAAGCGATGTATTCGTATTGTCAAAACACCCGAGATTGAAGTTGGCGGATGCACGCTATGCAGACGCAATGGTTTTAGCAAATCGGGATTTGGTCCACGCACAGTTCTACTCTGTGATCAGTGTGAGAAGGAATTTCATGTCGGCTGTTTGAAGGATCACAAAATGGGAGATCTAAAGGAATTGCCAAAAGGGAAGTGGTTTTGTTGCACTGGTTGCAGTAGGATTCATTCTGCCTTGCAGAAGTTGCTTGTTTGTGGATCAGAGAAGCTCCCAGACTCCCTTTCTAATGTTATAAAGAAGAAGAGTGTGGAAAAATGTTCAAATAGCGATGCAGATCTTGATGTAAGATGGAGGCTTCTTAGTGGGAAAACTGCTTCGCCTGAGAGTAGATCGTTGCTTTCTAGGGCTGTTGCAATTTTCCATGACTGCTTTGACCCAATTATTGATTCAACAACAGGCCGTGACCTTATCCCATCCATGGTTTATGGAAGGAATCTAAGGGACCAAGAATTTGGGGGCATGTATTGTGCAGTATTGACAGTTAGCTCATCTGTCGTATCAGCTGGAATTCTTCGAATTTTTGGACAGGAAGTTGCAGAACTTCCTTTAGTTGCAACAAGTAGCGATTACCAAGGACAGGGATACTTCCAATCGTTGTTCTCTTGCATTGAGAGACTTCTGGCATCCTTGAATGTGAGGAACCTTGTGCTCCCAGCTGCTGATGAAGCTGAATCCATATGGACCCAGAAATTTGGTTTCAACAAGATAAGTAACGAACAGCTGAGCAAGTACAGGAAGGACTGCCAGATGATGACCTTTCAAGGGACGTCTATGCTACAGAAGCCGGTCCCCGAGTGTCAAATTGTTGGTAAATCAACTGAGGAAAGGTGA 3498 0.4508 MANGTDSEEFVLLSGPRTGLKREFSFAVKVQSELSGSLGRTRSRKFQNSPSSNGVLENLSNKRLKSSCAKKEPKNDVEKVPTEEEAQNDSAKSPSGEEPKSDLAKSTSEEELKSGALKSSSAEDPKNHRAKSPREEGSGEKTGVMIGDNSEVPNALPKKPLRRLTRSASKLNAERMVTNDNSEVRNDSVKSSSMEELESNLAKLTREEPKNDFLKSLSSEDPKNNVAKSPREEGTNVETPILIDDTINEQNALLEKPLRRFTRSALKHKVEPVVLADNSKVQNALPEKPLTRFSSALEPKGEPMVVDDNSKVQNVWVKCPSKKEPKGDLAKPTSEEEQKIHSLKSPSGEEPMNNGAKSPREEDTNVETPIVIDKNSEVQNHSTSKPKAESIDNNSEVHNTIPEKALRRFTRSALKPKVEPMVIDENSEVQNSLPDTPLRRFTRSALKPKAERMEILAMTTTSGNSIVSEDACKNEAIAKGDGRATNVVSSFRTPPKQKLEMKMSKKIAVTKFPAKVKELFETGMLEGLHVKYIFRGKKKGGLQGTIKNRGILCSCSLCKGCKVVTPFQFEQHAGSTNKHPADHICLENGNSLREVLNACKDATLDTLETTIQRAICSTPIKNATICSNCKGPLPALFTKRRMLLCNSCLESEKSQANPAHATGADARLSKSVVTPKSLDGAPNCISPQNKSSQGKLTRKDLRLHKLVFEEDGLPDGTELAYYVRGQKLLEGYKKGFGIFCRCCNSEVSPSQFEAHAGWASRRKPYLHIYTSNGVSLHELSLSLSKGRKFSANDNDDLCSICADFGDLLLCDGCPRAFHKDCVGQASIPRGDWYCPYCQDMFQRDKSCANNANAKAAGRVSGVDPIEQISKRCIRIVKTPEIEVGGCTLCRRNGFSKSGFGPRTVLLCDQCEKEFHVGCLKDHKMGDLKELPKGKWFCCTGCSRIHSALQKLLVCGSEKLPDSLSNVIKKKSVEKCSNSDADLDVRWRLLSGKTASPESRSLLSRAVAIFHDCFDPIIDSTTGRDLIPSMVYGRNLRDQEFGGMYCAVLTVSSSVVSAGILRIFGQEVAELPLVATSSDYQGQGYFQSLFSCIERLLASLNVRNLVLPAADEAESIWTQKFGFNKISNEQLSKYRKDCQMMTFQGTSMLQKPVPECQIVGKSTEER* 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01394 1165 Pfam Tify domain binding domain 544 599 IPR032308 -
Eupl01g01394 1165 Pfam Tify domain binding domain 731 779 IPR032308 -
Eupl01g01394 1165 FunFam PHD finger family protein 983 1151 - -
Eupl01g01394 1165 MobiDBLite consensus disorder prediction 122 138 - -
Eupl01g01394 1165 SUPERFAMILY FYVE/PHD zinc finger 881 939 IPR011011 -
Eupl01g01394 1165 CDD PHD1_AIRE 797 837 - -
Eupl01g01394 1165 MobiDBLite consensus disorder prediction 95 112 - -
Eupl01g01394 1165 ProSitePatterns Zinc finger PHD-type signature. 798 837 IPR019786 -
Eupl01g01394 1165 MobiDBLite consensus disorder prediction 171 199 - -
Eupl01g01394 1165 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1004 1135 IPR016181 -
Eupl01g01394 1165 ProSiteProfiles Zinc finger PHD-type profile. 795 840 IPR019787 -
Eupl01g01394 1165 Pfam PHD-finger 798 838 IPR019787 -
Eupl01g01394 1165 PANTHER AUTOIMMUNE REGULATOR 323 1152 - -
Eupl01g01394 1165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 872 IPR013083 -
Eupl01g01394 1165 MobiDBLite consensus disorder prediction 321 344 - -
Eupl01g01394 1165 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 992 1152 IPR000182 GO:0016747
Eupl01g01394 1165 Gene3D - 984 1151 - -
Eupl01g01394 1165 MobiDBLite consensus disorder prediction 34 63 - -
Eupl01g01394 1165 SMART PHD_3 885 942 IPR001965 -
Eupl01g01394 1165 SMART PHD_3 797 838 IPR001965 -
Eupl01g01394 1165 MobiDBLite consensus disorder prediction 317 364 - -
Eupl01g01394 1165 MobiDBLite consensus disorder prediction 218 232 - -
Eupl01g01394 1165 MobiDBLite consensus disorder prediction 34 240 - -
Eupl01g01394 1165 SUPERFAMILY FYVE/PHD zinc finger 786 838 IPR011011 -
Eupl01g01394 1165 MobiDBLite consensus disorder prediction 64 86 - -
Eupl01g01394 1165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 883 944 IPR013083 -
Eupl01g01394 1165 MobiDBLite consensus disorder prediction 200 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01394 Eupl-Chr1 34366361 34375545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01394 505 702 PHD Transcription Factor Family AT2G36720 38.756 4.38e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Eupl01g01394 TDBD 3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01394 - - ming:122069958 1209.13