Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01392 ATGACCGATATCCATCCGCTGCAACAGAAGCAGGAGAGCAACGATGCCTGTGCCGAGTTCCAGCGGGGATTAGAGGAGTTCATGCGGGGTCATTTGGACGATTGCATGTCATTGACCTCCTGTAGCTCTACTCGCGACCAGGAGGACGATGAGGAGGAGGGCGATCAACTCGTGCGCCGGAGGCGACGGTCTGATCTCGAAGGAGATGACCTGGCAGAGTCTTCTGCCGCACGGAGGCGCCACTCTCGTATCTTGAGTAGGTGGGCTGCGCGGCAGGCCCAGGAGATGATCACTCCGATTGAGAGGCAGAATCACGAGTCTGAACTTATGGCTCTCGCAGGTTTGCACACAGTCTCCATGCTTGATTCTTCTTTCCTGAGGGAGTCGCAGTCTCCGACTTCAAGACGGCAGAGGGCCGCCGAGAGGCCAAGCACCCAGGCATCCTCTCTCCTGCAAATGTGGCGGGAGCTGGAGGACGAACACATGCTCAGTCGTGCCAGAGAAAGGGTGAGAGAAAGGTTGAGGCAACAGAGGAACATCGAGTCTAATACGAACATCTTGAGCATGAACATGTCCGAAAGCCGGGGTAATGAACACCAGGGTAGTTTGGAGGAGGATGCCAGTGAGAGTGAGAATGAGTATGGGACATGGCCCCAGGGTCAAATGGGTTCACAGAATGAGCGTGGAGACCACCACATTTCTAGCCGGGAACAGTCTCCGGACCTTGGGGAAGTCGAAAGGGAGAGGGTGAGGCAAATTGTTCGGGGTTGGATGGATAGTGGCATAACTGACCATGTGTCTAATGTGTCCCCGAGGAACAATCCGAGGGAAGAATTGCTTGGTGAAACTGAACGTGGGAGGGTGAGACTCGTGAGAGAGTGGGTCCAATTGGCAAGTCAGCAGAGAGGTACACGTGGCAGCAGAAGGGAAGAGCAAGCTGCAGGACTTGGTGCTCAGATTGACCATGCTCGGGATGGATTGGTTGTTGACCATGATGAAGGCCAACCTGAGCATATCCGGAGGGACATGCTGAGATTACGTGGCAGACAGGCTCTTCTAGATTTGCTTGTGAGAATTGAGAGGGAAAGGCAGAGAGAACTGCAGGGCTTGTTGGAGCATCGGGCTGTTTCAGACTTTGCTCACCGCAACCGCATTCAGTCATTACTCAGAGGTAGATTCTTACGAAATGAAAGATCAACCGAGGATGAGAGGCCACCTTCTGTGGCGGCAAGTGAATTGGGTCAGTTAAGACAACGACATACTGTGTCTGGTTTAAGGGAGGGATTTCGCTCCAGATTAGAAAATATTGTTCGCGGGCAAGTAAGCAGCCATGCTGATACCTCATCTAGTAGTAACATCAATGTTTCTAGAAATGAACAAACTCAAACAAGCACTTCAGATGAGGCCCCAAATGAAAACCGTGTACAATCTCTACCTAGGAGTCAAGGAAGTGACGTTCATCGGTTGTTGGAGCACACAGGGGAGTTGGAAAGCAACACGGCTGTTGAAAGTTTGAATTGGCAAGAACCTACTACGCAAGGAGGGGATTTGGAAGAACAAGTTACAGAAGATGAGAGAAGGGACTGGCAGCAGTCTACTGAAGTTGAATTTAATGAATGGCGAGATGGTAATGGAGAAGCAAGGGGTGGGAACTGGCAGGAGAATACAGCTACGGACTGGCCCCAGGAAACTCCAGGAAATGAAGGCGAAGAAGACAGTCATCTTCAAGAAGTGCATGAGTGGCATGAGGATGGTGCTCGGGATGCTGTGGATAATTGGCCTGATGGGCGTTCTGATCCTCCAAGAACTCGGCGTTCTATTCTCGATAGAAGGGGTAATGGATTCCATCCACCTGATGATGATAATGTGTACAGTATGGAACTTAGAGAACTTCTTAGCAGGAGAAGTGTCTCCAATCTTCTTCGCAGTGGGTTTCGTGAGAGTCTGGACCAATTGATACAGTCGTATGTGGAAAGGCAAGGTCATGCTCCCATTGACTGGGATCTGCATGGAACCTTGCCTACGCCTGCTTCACCAGAGCAAGATCATGAGCAGCAGAGAGAACAGAATGAGCCAGACACTGTTGCTAGACCTCCACTTGTGCTGCCTTCTCCACCAGTGCCACCACCACCACCGCTTTGGCATCAGGAGCTGCATCATGCTAATTGGCCTCGGCACAGCATGCATCGTTCAGAAATTGAGTGGGAGATCATTAATGATTTGAGGGCAGACATGGCTAGGCTTCAGCAAGGGATGAGCCACATGCAGAGGATGTTGGAGGCCTGCATGGATATGCAACTGGAGTTGCAGCGCTCAGTTAGACAGGAAGTTTCTGCAGCTTTAAATCGCTCAGCTGGTGGACCAGGGTTGGGCGTAGAGTCATCAGATGATGGATCAAAATGGGATCATGTTAGGAAGGGGACTTGTTGTGTGTGTTGTGATAGTCATATTGATTCTCTACTGTACAGATGTGGGCACATGTGCACTTGTTCAAAATGTGCAAATGAGTTGGTTCGAGGGGGAGGAAAGTGTCCATTATGTCGTGCACCGATCATCGAGGTGGTCAGAGCTTATTCTATACTGTAA 2586 0.5077 MTDIHPLQQKQESNDACAEFQRGLEEFMRGHLDDCMSLTSCSSTRDQEDDEEEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITPIERQNHESELMALAGLHTVSMLDSSFLRESQSPTSRRQRAAERPSTQASSLLQMWRELEDEHMLSRARERVRERLRQQRNIESNTNILSMNMSESRGNEHQGSLEEDASESENEYGTWPQGQMGSQNERGDHHISSREQSPDLGEVERERVRQIVRGWMDSGITDHVSNVSPRNNPREELLGETERGRVRLVREWVQLASQQRGTRGSRREEQAAGLGAQIDHARDGLVVDHDEGQPEHIRRDMLRLRGRQALLDLLVRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERSTEDERPPSVAASELGQLRQRHTVSGLREGFRSRLENIVRGQVSSHADTSSSSNINVSRNEQTQTSTSDEAPNENRVQSLPRSQGSDVHRLLEHTGELESNTAVESLNWQEPTTQGGDLEEQVTEDERRDWQQSTEVEFNEWRDGNGEARGGNWQENTATDWPQETPGNEGEEDSHLQEVHEWHEDGARDAVDNWPDGRSDPPRTRRSILDRRGNGFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQGHAPIDWDLHGTLPTPASPEQDHEQQREQNEPDTVARPPLVLPSPPVPPPPPLWHQELHHANWPRHSMHRSEIEWEIINDLRADMARLQQGMSHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGGPGLGVESSDDGSKWDHVRKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIIEVVRAYSIL* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01392 861 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 793 859 IPR013083 -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 124 149 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 54 78 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 667 709 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 40 78 - -
Eupl01g01392 861 SUPERFAMILY RING/U-box 800 854 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 567 622 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 440 622 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 229 245 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 497 517 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 174 245 - -
Eupl01g01392 861 CDD mRING-HC-C3HC5_NEU1 806 858 - -
Eupl01g01392 861 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 861 - -
Eupl01g01392 861 Pfam Zinc finger, C3HC4 type (RING finger) 806 853 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 212 228 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 519 543 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 440 483 - -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 179 197 - -
Eupl01g01392 861 ProSiteProfiles Zinc finger RING-type profile. 809 848 IPR001841 -
Eupl01g01392 861 MobiDBLite consensus disorder prediction 549 563 - -
Eupl01g01392 861 Coils Coil 738 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01392 Eupl-Chr1 34330427 34344529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01392 773 855 C3H Transcription Factor Family AT3G06140 32.530 2.51e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01392 - - nnu:104586194 1296.18