Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01354 ATGGATTGGGTTGATTTAGTTAGTAAGATGGAGAAGGAGGACGAGCAAAGAATGGCTTGGAATGGAAACTTTAGACCATTTACCTCTCGAACAGGAGAACACACCTTCACCTTCCTTTACGACAACGCCTTCGACTCATTTCCAGAGGTCAAGTGTAGACCGGTAGTGGAAGTACCGCCGGTAGAGGTTCCTGCAAGTAGCAAGAACCAGGAGAGGAAGCGAAGGCTGACAAGTGATCAGATAGATTCGTTAGAGAGCAGCTTTCAGGAAGAGATAAAGCTGGAACCAGAGAGGAAGATGAGGTTGGCTCGGGAGCTGGGCCTTCAACCTCGTCAAGTGGCTGTTTGGTTTCAAAACCGGCGGGCAAGATGGAAGGGCAAGCAACTCGAGCGAGTCTACGATGCGCTTAAGCAGGAGTATGGTGTCATCTGTAGAGAGAAGCAAAAGCTCCAAGAGGAGGTTATGAAACTGAAATCCAAGCTTGAGGACCGAGTGGTGGTGGTGAAGCAAGGTTCCACAGGTTATACAGAGGCCTCGGCCGAAGACACCGTCGAGAGCACGTCGGTAGCGATTCGAAGCTCCAACAGTTTACAAGGAACGAGTTGCCACCAGATTTCTGAGTATGGGTATCTTTTCAATGTGGATGAATATAATCCAGCTTCATCACCTTACTGGGGTGTCTTTCCGCGTTACCCTTAG 699 0.4921 MDWVDLVSKMEKEDEQRMAWNGNFRPFTSRTGEHTFTFLYDNAFDSFPEVKCRPVVEVPPVEVPASSKNQERKRRLTSDQIDSLESSFQEEIKLEPERKMRLARELGLQPRQVAVWFQNRRARWKGKQLERVYDALKQEYGVICREKQKLQEEVMKLKSKLEDRVVVVKQGSTGYTEASAEDTVESTSVAIRSSNSLQGTSCHQISEYGYLFNVDEYNPASSPYWGVFPRYP* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01354 232 PRINTS Lambda-repressor HTH signature 98 107 IPR000047 GO:0003677
Eupl01g01354 232 PRINTS Lambda-repressor HTH signature 107 123 IPR000047 GO:0003677
Eupl01g01354 232 ProSiteProfiles 'Homeobox' domain profile. 67 127 IPR001356 GO:0003677
Eupl01g01354 232 CDD homeodomain 72 128 IPR001356 GO:0003677
Eupl01g01354 232 SUPERFAMILY Homeodomain-like 61 128 IPR009057 -
Eupl01g01354 232 Gene3D - 64 135 - -
Eupl01g01354 232 SMART HOX_1 70 131 IPR001356 GO:0003677
Eupl01g01354 232 FunFam Homeobox-leucine zipper protein HOX13 75 124 - -
Eupl01g01354 232 Coils Coil 119 153 - -
Eupl01g01354 232 Pfam Homeodomain 72 125 IPR001356 GO:0003677
Eupl01g01354 232 ProSitePatterns 'Homeobox' domain signature. 102 125 IPR017970 GO:0000981|GO:0006355
Eupl01g01354 232 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 67 180 IPR045224 GO:0003700
Eupl01g01354 232 Pfam Homeobox associated leucine zipper 127 161 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01354 Eupl-Chr1 33808267 33809398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01354 35 157 Homeobox Transcription Factor Family AT5G03790 51.095 2.30e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl01g01354 Homeodomain 2.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01354 - - nnu:104612531 260.766