Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01343 ATGGAGTCTGCGGAAATTATACTGGACGATCGAGCAAGGAAGAGGTTAAAGAGGGAGGTTCACGAAGAGAGTGTTAATAGAACAGAGGGTTTGGAAAGTAAGGGGAGGGAAACGAGGTTGAAGGCTCTGGTGGGAAGATATGTGAGGAAGGAGTTCTTTCTGGGAAAGGTTGTTTCTTACAGTAGTGGATTATACAGAGTTGATTATGAGGATGGGGATTGTGAGGATTTGGAGTGCGGTGAAATCCGTGAGATTCTATTGGGGGAGGGTCATTTTGATGCGGACCTTAATACCAGGAAGACGAAATTAGATGAGCTGATTTCTTTGGGTGGTTCAAAGATACTGAGTAGGAGATTAGGGAGGAAGGCAGTGGCCTCTTCCAATGACTTGGATGGAGTTGAAGCATTGCCCATCAGTAAGTCAAGTTCTGATTTTGAATATGGTTCTTCGAAGGGTCTTGAACCAAACGGGGTTCAGAAACCTTTTAGAGGTGGAGATGCTGACTCTTCTAGTGATTCATGTGAGTTTGTTTGCATTCGGGATTCCCGCTTAGAGACCACAGTCCCCCATATTCCACCACCATCATTGCCTCCATCTTCGGGCAACATCGGCATCCCTGAGGAATCTGTTTCTCATCTCTTCTCAGTGTACAGTTTCTTACGATCATTTAGCATACAGCTATTTTTGAGCCCCTTTGGGTTGGATGATTTTGTGGGGTCACTTAATTGTGTTGCCCCCAATACTTTGTTGGATGCCATACATTTTGCCCTTATGCGTGCATTGAGACGTCATCTCGAGATGCTTTCTTCTGATGGGGCTGAGCTTGCATCAAAATGCCTGAGGCACCTCGATTGGAGCTTACTTGACACATTGACTTGGCCAGTTTACGTAGTTGAATATCTTCTGATAATGGGGTACACAAAGGGGCTGGACTGGAAAGGATTTTACACTGGTGTTTTAGACAAGGAATATTACAGCCTATCTGTGACTAGGAAACTGATGATCTTGCAAATCTTGTGTGATGATATCATAGAATCTGCAGAATTAAGAGCAGAAATTGATATGCGGGAAAGTGCAGAAGTGGGTACAGATTCCGATGGGACTGCAAGCCTTCCTCCTGAAAATGGACCGAGAAGGGTACATCCCAGATACTCCAAGACCTCAGCTTGCAAGAACCCAGAAGCTATGGGGATCATTGCCGAATCTCACGAATTGAAATCACCTCATTGCAGGAGTTCTTCAGGTTCTAAACTTTCTGGGCCAGACACAGATGCTGCTGATGTTGATCAGGATGGGAATGGCGATGAATGCCGGCTTTGCGGCATGGATGGGACCTTGCTTTGCTGTGATGGGTGCCCCTCAGCCTATCATACAAGATGTATTGGTCTGAGCAAATTGCTTATACCAGAAGGGTCATGGTTTTGCCCAGAGTGTACAGTTACTAAGATGGGGCCAACTCTGAGAATTGGAACAGGGCTGAGAGGAGCAGAGATCTTTGGCATCGATCCATATGAGCAGGTTTTTTTGGGTACTTGCAATCACTTACTTGTGCTCAAGACTGCAATCAATGCAGGACCATCTTCCAGATACTACAATTTGAATGACATTGCACAAGTCCTGCGAGTGCTTTGTTCATCTGTACAATATACAACCTTGTACTCAGGGATATGTAAGGGCATTTCACTGTATTGGGAAATAGCAGAAGATACAAACTTTGCTCTTCCTGTAAGAATTGAAACTGGTATAAATCTAGCAGATGATAAGGAAGGTACAATGGTTTCTATTCCATCGAACACCCTTTCTGGTAAGGAGACTCATAAACTATTAGATGCAATTGAGGGGGAGAACTATGGAAGCTGTGTAACTGAAAGTAATGTAGAGAACAGAGCACTTTCGTGTCAAGATAATGATTGCCAAGAAGCTGGATTGAACAGCAGCTCCTTGGATACAGTAAGCCAAGCTGATCCCCCAGGTTTGCAGAAGGATGATTTTACAGCTCAATTGGTCTGTCCACTCACTAATAACAAGTCTCATGAGCAGTTCGGAACAGATTCTACGGTGTCTACTGAGTCAGTCAGCCTTAATGCTGACCCTTCTGACTTAATCCACCAAAGCTTGGCTGAAAGATCAATTATGTTAGAATTGGCTTCCTGTGCCTCGGGAAACAAGTGTGGTGCTAACAGGGAAGATTCAGATGGTATGTTTTTGCCTGCAAGTAATGGTGCTTTGAGCATGTATCGTGAAAGCAGAAAGGGTAAGCATAGTGCTGATGGGAACAGTAAAGAAGATATGAATGATGATTGCTCGTACATGGGTGCTTTCTTCAAGCCTCAATCTTACATAAATCAGTATATTCTTGGTGATGTTGCTGCAACTGCAGCTGCTAATCTGGCTGTTCTTTCATCTGAAGAATATCGAGTTTCTGAGGCTCGCACTTCATCCAACCCGAGGAAAATTGTCTCCGCAAACATCTCACTGCAAGTAAAAGCATTCTCATCAGCATCTATTCGTTTTATCTGGCCAAATTCTGAAAAGAAGCTAGTGGAGGTCCCAAGGGAAAGGTGCGGTTGGTGTCTTTCATGCAAGGCTCCCGCTACAAGCAAGAAAGGATGTTTGTTAAACTTAGCTGCCGCAAATGCCATCAGAGGATCTTCAAGGATCCTTGGTGGTCTTCGTCCCATAAAGAACGGAGACGGATATCTTCCTGGTATTGCAGCATATATTTTATACATGGAAGAGAGATTACGTGGTTTAATAGTGGGGCCCTTTCTGATTGCAAATTATCGAAAACAATGGCGTAAACAAGTTGAACAAGCTTCAACCTGCAATGCAATAAAGCTCCTCTTGCTCGAACTTGAGGAGAACATTCGATTAGTTGCTTTCTCTGCAGCCTGGGTTAAGCTGGTAGATGATCGGTCGGTTGAGGCTTCTGTGGCCCAGATTAGTACATGCTCCACTGGAACTCAGAAGCGTGGACCAGGTGGGAGGCGGAATAGGAAACAATCTCTAACACTTGAAATTACAACAGACCCTTGTGATGACAATTTGAAGAGTGTTAGCTGGCGGCGTGGAGGGAAACTTTCAAAGCTTATATTTCATAAAGGGATTTTGCCATACTCAATAGTTAAAAAGGCAGCTCGTCAAGGTGGTTCTAGAAAGATTTCTGGTGTTTATTATGCTGAAGGGTCTGAGATTCCCAAACGAAGCAGACGGTTTGCTTGGAGAGCAGCAGTAGAAATGAGTAGGAATGCACCACAGCTTGCGCTTCAGGTCAGATACCTTGACCTTCATGTAAGATGGAGTGATCTTGTTTGTCCAGAACTGAACTCTCAAGATGGGAAAGGAACAGAGACAGAGATTTCTGCTTTCAGAGATGCGGTCATTTGTGATAAGAAGATTCAGGAGAACAAGATTGAGTACGGATTATTTTTTGGTAATCAGAATCATCTACCTTCCCGTGTCATGAAGAACAGTATTGAAGTGGAGCAGAACCAAGATGGGAAGGACAAATTTTGGCTCTCTGAAAGTCACATCCCTTTGTACCTGATTAAAGAATACGAAGAGAAGGCAGAGAAGGTCCCTTTGCCGTCAGCTAAGATGGCCTCACATATTTTGTCCAAGTTACAAAGAAGACAACTAAGAGCTTGCCGGAGGGATATATTCTCGTATATTATGCGTAAGGGGGAGAAACTAGACAAGTGCTCCTGTGCCTCGTGTCAAGAGGACGTTTTGCTCAGGGCTGCGGTCAAGTGCAGTGCATGTCAAGGTTATTGTCACAAGGATTGTTGTACCATTCCTTTTACAGTTGACACAAATGGTGGTGTGGAATTTCTGATAACATGCAACCAGTGTCTCCGTGCTAAAGCTGTTGCTCTTAATGAGTATAGTAAGGAGCCCCCTATTTGTCAATTATCCCTTCAAGGGAAAGAACATCAGATGGCAGCAACAGTCACTAGAGGCGCATGGCAGAACAGTTATCATCAACCCTTCGTATCCACTGGGAGTGTGGCAACTCATTCGGTAATGAATCCACCTACCCCAGGTCCTAACTTGGCAACTAAAGGTAAACGTGGGACAGGTCCTTCTTATGGTATCAGATGGAAGAAGAAGAACAGTGAGGAAACTGGCACCAATTTCAGGCTCAGCAACATTCTTCTCAGAGGCAATGCAGATATGGACCCATCGAGGAGACCCAAATGCAAACTTTGCTCTAAGCCATACAGCTGTGATCTGATGTATATTTGCTGTGAAAATTGCAAAAATTGGTTCCATGCCGATGCCATCCAACTCAAGGAATCTAAAATTTTCGATGTGGTGGGATTCAGATGCTGCAAGTGCCGTAGGAAAAGCTCACCTGTATGCCCTTACAAGGACTCAGAGGGCAGGAAGCCAAGTATGAGGGCTTCAAAGCAAGGTAACATGGGAATGGACCCCTTGTTTGAAACCATCTGCAAACAACCTGATGGATGGGAAACTACTACAGCACTACACACAAAGATGGAGAAGGTGATCATTGAAGAGGATGATCCCCTTCTTTTCTCTCTTGAAAGAGTTGTGCAAATCATAGAGCCCACATCAGAAGTTGGGCCTGGATTGGATACTGCAGGAGCATTATACCATGGCCCACAGAAACTTCCAGTCAGAAGACATGTAAAACACGAAAATGATGCAGACAGTTTTTCCATGAATCTATCTCATGCAGAATCCACACCCCTTGAAGCAAACAACCTTTTGAACAAAACTGAGGAAGCATCACATCCTCAAGTCAAATGGGAGTTCCCTATCGATGGCTTTAAAGATGATGAGATGTTTGACTACGAAGGTGTGAACTATGACGACAGGGAGTATGAACCTCAGACCTACTTCTCTTATACTGAATTGCTGGCAACTGATGATGACCAGTTGGACCTATTTGATGTGTCCAAGGACACGTCAGGTAATTGGGGCAATTCCTTTGGTTCTGCTGCAATTCAGCCCCACAACCTGCATCAAGATCTAGCCATTGTAGAACCTGCTATCAACACAGTGCCCTGCCGGATATGTTCACAGAAAGAACCAGCCCCAGATATGTCTTGCGAGATTTGTGGGATTTGGATACACAAACATTGTTCACCATGGGATGCACCATCTTCTTGGGAGGAAAGGTGGAGATGTGGTCATTGCCGGGATTGGCAGTAG 5178 0.4446 MESAEIILDDRARKRLKREVHEESVNRTEGLESKGRETRLKALVGRYVRKEFFLGKVVSYSSGLYRVDYEDGDCEDLECGEIREILLGEGHFDADLNTRKTKLDELISLGGSKILSRRLGRKAVASSNDLDGVEALPISKSSSDFEYGSSKGLEPNGVQKPFRGGDADSSSDSCEFVCIRDSRLETTVPHIPPPSLPPSSGNIGIPEESVSHLFSVYSFLRSFSIQLFLSPFGLDDFVGSLNCVAPNTLLDAIHFALMRALRRHLEMLSSDGAELASKCLRHLDWSLLDTLTWPVYVVEYLLIMGYTKGLDWKGFYTGVLDKEYYSLSVTRKLMILQILCDDIIESAELRAEIDMRESAEVGTDSDGTASLPPENGPRRVHPRYSKTSACKNPEAMGIIAESHELKSPHCRSSSGSKLSGPDTDAADVDQDGNGDECRLCGMDGTLLCCDGCPSAYHTRCIGLSKLLIPEGSWFCPECTVTKMGPTLRIGTGLRGAEIFGIDPYEQVFLGTCNHLLVLKTAINAGPSSRYYNLNDIAQVLRVLCSSVQYTTLYSGICKGISLYWEIAEDTNFALPVRIETGINLADDKEGTMVSIPSNTLSGKETHKLLDAIEGENYGSCVTESNVENRALSCQDNDCQEAGLNSSSLDTVSQADPPGLQKDDFTAQLVCPLTNNKSHEQFGTDSTVSTESVSLNADPSDLIHQSLAERSIMLELASCASGNKCGANREDSDGMFLPASNGALSMYRESRKGKHSADGNSKEDMNDDCSYMGAFFKPQSYINQYILGDVAATAAANLAVLSSEEYRVSEARTSSNPRKIVSANISLQVKAFSSASIRFIWPNSEKKLVEVPRERCGWCLSCKAPATSKKGCLLNLAAANAIRGSSRILGGLRPIKNGDGYLPGIAAYILYMEERLRGLIVGPFLIANYRKQWRKQVEQASTCNAIKLLLLELEENIRLVAFSAAWVKLVDDRSVEASVAQISTCSTGTQKRGPGGRRNRKQSLTLEITTDPCDDNLKSVSWRRGGKLSKLIFHKGILPYSIVKKAARQGGSRKISGVYYAEGSEIPKRSRRFAWRAAVEMSRNAPQLALQVRYLDLHVRWSDLVCPELNSQDGKGTETEISAFRDAVICDKKIQENKIEYGLFFGNQNHLPSRVMKNSIEVEQNQDGKDKFWLSESHIPLYLIKEYEEKAEKVPLPSAKMASHILSKLQRRQLRACRRDIFSYIMRKGEKLDKCSCASCQEDVLLRAAVKCSACQGYCHKDCCTIPFTVDTNGGVEFLITCNQCLRAKAVALNEYSKEPPICQLSLQGKEHQMAATVTRGAWQNSYHQPFVSTGSVATHSVMNPPTPGPNLATKGKRGTGPSYGIRWKKKNSEETGTNFRLSNILLRGNADMDPSRRPKCKLCSKPYSCDLMYICCENCKNWFHADAIQLKESKIFDVVGFRCCKCRRKSSPVCPYKDSEGRKPSMRASKQGNMGMDPLFETICKQPDGWETTTALHTKMEKVIIEEDDPLLFSLERVVQIIEPTSEVGPGLDTAGALYHGPQKLPVRRHVKHENDADSFSMNLSHAESTPLEANNLLNKTEEASHPQVKWEFPIDGFKDDEMFDYEGVNYDDREYEPQTYFSYTELLATDDDQLDLFDVSKDTSGNWGNSFGSAAIQPHNLHQDLAIVEPAINTVPCRICSQKEPAPDMSCEICGIWIHKHCSPWDAPSSWEERWRCGHCRDWQ* 1726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01343 1725 Pfam DDT domain 208 264 IPR018501 -
Eupl01g01343 1725 CDD PHD_SF 1678 1721 - -
Eupl01g01343 1725 ProSitePatterns Zinc finger PHD-type signature. 437 478 IPR019786 -
Eupl01g01343 1725 SMART testlast3 207 267 IPR018501 -
Eupl01g01343 1725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1394 1454 IPR013083 -
Eupl01g01343 1725 MobiDBLite consensus disorder prediction 1344 1363 - -
Eupl01g01343 1725 PANTHER PHD FINGER FAMILY PROTEIN 38 1689 - -
Eupl01g01343 1725 SUPERFAMILY FYVE/PHD zinc finger 1669 1723 IPR011011 -
Eupl01g01343 1725 ProSiteProfiles DDT domain profile. 207 267 IPR018501 -
Eupl01g01343 1725 SUPERFAMILY FYVE/PHD zinc finger 409 481 IPR011011 -
Eupl01g01343 1725 SUPERFAMILY FYVE/PHD zinc finger 1391 1453 IPR011011 -
Eupl01g01343 1725 MobiDBLite consensus disorder prediction 404 427 - -
Eupl01g01343 1725 Pfam PHD-finger 437 479 IPR019787 -
Eupl01g01343 1725 CDD PHD_SF 1400 1446 - -
Eupl01g01343 1725 ProSiteProfiles Zinc finger PHD-type profile. 434 481 IPR019787 -
Eupl01g01343 1725 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 310 354 IPR028942 -
Eupl01g01343 1725 CDD PHD2_CHD_II 437 478 - -
Eupl01g01343 1725 CDD Tudor_AtPTM-like 44 87 IPR047365 -
Eupl01g01343 1725 SMART PHD_3 1399 1447 IPR001965 -
Eupl01g01343 1725 SMART PHD_3 436 479 IPR001965 -
Eupl01g01343 1725 SMART PHD_3 1677 1722 IPR001965 -
Eupl01g01343 1725 SMART PHD_3 1235 1285 IPR001965 -
Eupl01g01343 1725 MobiDBLite consensus disorder prediction 357 385 - -
Eupl01g01343 1725 MobiDBLite consensus disorder prediction 144 171 - -
Eupl01g01343 1725 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 487 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01343 Eupl-Chr1 33607293 33618009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01343 297 566 EF-hand Containing Proteins AT5G22760 52.941 1.52e-83 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Eupl01g01343 DDT 2.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01343 - - nnu:104612518 2075.44