Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01339 ATGGAGGGGAGGGAGAGTGTGGTATCTAAGTGTTCTCCGAAGGACATGGAGACTGAGTCTTCAGTGGGCAAAGTGGTGCCACAGGTAATGAACATGGCTATAAACATGAGCATGGACATGGAGAGAAGCCTTTCAGGAGGAGGAGGAGGTATGGATATGTTGGGCAAGAAGAAGAGAGGAAGGCCTAGGAAGTATGGTTCAGAGGGGAACATGGCATTGGCACTCTCACCAGGCTTCTCATCTTCACCCTCTGACTTCTCTCCCAAGCGGGGTAGAGGGCGGCCACCGGGTTCCGGCAACCGACAACTCCTTGCTTCTCTGGGTGAGTGGATTGCGGGCTCGGCGGGAGGAAATTTCACACCCCATGTGGTTACTATAAATACTGGGGAGGATGTTTCTGCAAAGATATTATCATTTTCACAGAAGGGTCCTCGGGCTATTTGCATCCTCTCTGCTAATGGAGCTGTTTCTAATGTCACCATTCGCCAGCCTGGTTCTTCTGGTGGTATTTTGACATACGAGGGCCGCTTCGAGATATTATCTTTATCTGGGTCCTTTACTCTCACTGAAACCGGTGGTGTGCGTAGTAGAACTGGTGGGATAAGTGTCTCCTTGGCTGGACCTGATGGTCGTGTGATTGGTGGTGGGGTTGCAGGTTTATTAACGGCCGCCAGCCCAATTCAAGTTGTGGTGGGGAGTTTCATGCCAAACAGTCACAAGGTGCACAAAAAGAAGTACAATCTTGAAACTTCAATGCCTTCGCCGATTCCAAATACTTCAAATATAGTGACAGCAGCAAGACCCATCTCCAAGCAACACCTGATGATGAGACCAGTGTAA 840 0.4964 MEGRESVVSKCSPKDMETESSVGKVVPQVMNMAINMSMDMERSLSGGGGGMDMLGKKKRGRPRKYGSEGNMALALSPGFSSSPSDFSPKRGRGRPPGSGNRQLLASLGEWIAGSAGGNFTPHVVTINTGEDVSAKILSFSQKGPRAICILSANGAVSNVTIRQPGSSGGILTYEGRFEILSLSGSFTLTETGGVRSRTGGISVSLAGPDGRVIGGGVAGLLTAASPIQVVVGSFMPNSHKVHKKKYNLETSMPSPIPNTSNIVTAARPISKQHLMMRPV* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01339 279 MobiDBLite consensus disorder prediction 1 21 - -
Eupl01g01339 279 Pfam Plants and Prokaryotes Conserved (PCC) domain 121 234 IPR005175 -
Eupl01g01339 279 PRINTS AT-hook-like domain signature 56 66 IPR017956 GO:0003677
Eupl01g01339 279 PRINTS AT-hook-like domain signature 87 98 IPR017956 GO:0003677
Eupl01g01339 279 Gene3D - 121 252 - -
Eupl01g01339 279 MobiDBLite consensus disorder prediction 45 102 - -
Eupl01g01339 279 FunFam AT-hook motif nuclear-localized protein 1-like 121 252 - -
Eupl01g01339 279 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Eupl01g01339 279 SMART AT_hook_2 56 68 IPR017956 GO:0003677
Eupl01g01339 279 SUPERFAMILY AF0104/ALDC/Ptd012-like 118 239 - -
Eupl01g01339 279 CDD DUF296 120 234 IPR005175 -
Eupl01g01339 279 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 261 IPR039605 GO:0003680
Eupl01g01339 279 ProSiteProfiles PPC domain profile profile. 116 258 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01339 Eupl-Chr1 33562076 33567646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01339 54 270 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 58.403 3.38e-79 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01339 - - nnu:104587535 355.14