Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01319 ATGGAAATGGAGAGTTCTCGTAGATCCATGGATAGGTTGAGAGAACCAGGTTTGAAGAAACCTAGATTGGCTGAAGAAGCCGAACGGGATCGCAGTTCGAACGGCGTCATTGATCGTGACCGGCTGTTTCCTCATAGAGTTTCCGCTGGAACCGGCCCGGCAACTGGACCGCAGCTTTCGAGGTTTAGAACAAACGAGAGGGAGAAAGATGATCCTGTCCGAGGAACTTTTCAGCAGCAGCAAGAGCTTGTCAGTCAGTATAAAACTGCTCTTGCGGAGCTGACCTTCAATTCAAAGCCGATCATCACTAACCTGACAATCATTGCCGGGGAGAACCTTCACGCAGCAAAGTCGATCGCGGCCACTGTTTGTGCGAATATCATTGAGGTTCCTAGTGAGCAAAAGCTACCGTCTCTCTATCTTTTGGATAGTATTGTGAAGAATATTGGGAGAGATTATATTAAATATTTTGCTGCCAAACTACCTGAGGTATTCTGCAAAGCATACAGACAGGTCGACTCTTCAATACATTCTGGTATGCGGCATCTTTTTGGGACGTGGAAAGGGGTATTTCCTCCTGCTTGTCTCCAGATGATCGAGAAAGAGCTAGGTTTCCAACCTGCCATCAATGGGTCATCTTCTGGAACCATGACATCTAGGCCTGATTCTCAGTCACAACGACCACCACATAGCATTCATGTTAATCCCAAGTATTTGGAGGTGAGGAAGCGCCTTCAGCAGTCAAACAAGGCAAAGGAAACCAATGACAATACTGGGACCATGTCTGCGCCAGCTGGGGATGCAGAGAGGCCTGATAGGACAGCTATTATTGGGAGTGGAAGGCCATGGACAGATCTACCTGTTAAGATGCATGATATTAGGCGTCCTCAAAGAGAACCATTAAGTGAACCTGTTCATGAGAAGAAAGCTGGTGCAGGATATGAAGATTATGAATATGGTTCCGATCCTTCAAGGAATCCAGACTTGGGAATTGGAAGTGGCGGTGAAAGGGCTACCGAGCGAGGACTTGACAAGCCTTGGTATGGAGCTGGCAGCAATGCTGCAGAGGCTACAGTTGGCCAAAGGAATGCTTTCGAGAGCCAGCATGGCTTCTCAAACTACCGAGCACCTAGATCTGTGCAAGCTGCTGCTCAGCTGCATCCAAGACAGAGCATTACAAATAGAAGCAGGGGAGGGATGTCGAGGAACTGGAAGAATTCCGAGGAAGAGGAGTACATGTGGGAGGATATGAGCTCTAGATTGACAGATCCTGGGGGCCCTGATAACTTAAGGAAAGACGGTTGGACTCCTGATGGTGCAGAAAAGCAGGAGGTTGAAGACCACACCCCAGAACCTCGCGGTGAACATGATATTGGGTCAAGGATAAATAGAGAAACTTCCACTGATTCATTATCCATAACACAGAGAGGACAAGCTGGATTTGGGCATCGGACATCATCTACGTGGTCATCGCAAGAGCCACACTCCCTGGATGGTTCGAACCATCCGAAAGTAACTTCAAGAATTTTAGGTCTGTCAGAAAGCGATCCTACCTCTCTCAGTGGTTTATCAACAAGCATGAGTTCATCTTTGGCCAGGACAGGACTTCAAACTCATATGGGGCCGTCATTAGGTGGCACTCCAAGCTTTGGATCTTTGGTGAACACAGTATCGGGGTCCAGTGGATATTTTGGACAACAACGGCATCGGCCTCTAGGACCTGCATCTCCATCTGGACAATCGTCCATGCATCAGCATACCCACTCACCTCCATCTTCAGCACTCCGTCAGCATCAGGAATCACACAATTTGACTGAACAAGAGCATCCACAAACTCAATCCATCTCTCTACCTGGTCCAAAAACATCTAATCTCCCAGGACAGTTGAACCAAGCACCTCATATTAAAATTACTCAAGATTCTTTCCCTATCATGTCTCAAAGTCATTTTCAGCCTGGTACATTGCGAAATTTGCAGTCAACTCGGTCACAGTCCCCTCAACATATACAGACTTCATCTCCTCTAATGCCTTTTCCTCAGATATGGCATCATAATCCGTTCTCACAGCAGCCACTTCCTGAGCCGACACAGTCTCAACCATTGGGTCAGACCCAAAAACCATTGCCTCAGTCCTCCATTTTTGGAACTCCCTCAACAATGGGGCACTCTGCGTCGGGCCATTCAAATAGTCCTGATGCAGATATCCCCGGACAGTCGACCACAGGTAGTCTGTTGGCTGCAATTATGAAGAGTGGACTACTCTCGAACAATTCAGTTACTGGTGGCTTCCCCAACTTGACTTTTCAGGACTCAGGGGTGTTGCCATCAAATTTGAATATTCAGCCCCCTCTACCAACTGGACCTCCTCCTCCTCCCCAGCTCGCAACATCCTCTGCTCCCATGGTCACACCAGCTTCTGTATTAGGCCCAACTTCCCATGGTAGCACGTCAGCTCTCACAACAGACCCTCAGACAACTGCTGTACTGCCTCCCCTGCCACCCGGCCCTCCACCTGCCTCGTCTCTTGTAGGTAGTACATCATCACAAACATCGAATGTAGCTAGTGCTGTGCCACATCCACTTTCAGGTCTTTTGAGCTCATTAGTTGCAAAGGGTTTGATATCTGCACCAGCAACAGAGTCACCAACTCTCATTGCTCCCCAGGTGCCCAGTCGGCTGCAGAACCAGAGCTCTGGCCTCGCTACAAGTATCTCTATGCCTGTTTCTTCAAATCCAGCTTCCTCAACCATCCCTTCATCATCGTCCGGGAATGAACTTTTTTCAGAACCTGCTGCTAAGAGCACTACCACCTTGTCTCAGGCCACGGCGACAGAGATGGACCTCATAGGCGTTGAGTTTAAGCCGGAAATTATCCGGGAATTGCATCCGTCAGTGATCAGTGGCCTCTTTGATGACATTCCGCATCAGTGCAGCATATGTGGCCTTCGACTTAAACTTCAAGAACGATTTGATCGCCACTTGGAGTGGCATGCTTCAAAGAAGTCAGAACCAAGCAGTAGCAATGGGGTTTCAAGGAGATGGTATGCGAGTTTGGGTGACTGGGTTGCTGGGGGTCTGGGGTCTCTATCTGGACCTACGTCCACTGCTTCTGTGGAAGGGTTGGTCAAAACAGCAGAGAAGAGTGAACCACTGGTCCCTGCAGATGAAAACCAGAGTGTATGTGTGTTATGTGGGGAGCCGTTTGAAGATTCTTACAGTCATGAAAGGGACGAATGGATGTACAAAGGAGCAGTATATATGACTATCCCAGTTGGGGAGGGCAATGTAGGAGCTACGGATGACAGTGCTGCTCAGGGTCCTATTGTGCACAGCAACTGTATATCACCAAGTTCAGTTTATGACTTGGGACTGGCCAAGAATGCTAAACTGGATCAAACGGATGGATGA 3408 0.485 MEMESSRRSMDRLREPGLKKPRLAEEAERDRSSNGVIDRDRLFPHRVSAGTGPATGPQLSRFRTNEREKDDPVRGTFQQQQELVSQYKTALAELTFNSKPIITNLTIIAGENLHAAKSIAATVCANIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDSSIHSGMRHLFGTWKGVFPPACLQMIEKELGFQPAINGSSSGTMTSRPDSQSQRPPHSIHVNPKYLEVRKRLQQSNKAKETNDNTGTMSAPAGDAERPDRTAIIGSGRPWTDLPVKMHDIRRPQREPLSEPVHEKKAGAGYEDYEYGSDPSRNPDLGIGSGGERATERGLDKPWYGAGSNAAEATVGQRNAFESQHGFSNYRAPRSVQAAAQLHPRQSITNRSRGGMSRNWKNSEEEEYMWEDMSSRLTDPGGPDNLRKDGWTPDGAEKQEVEDHTPEPRGEHDIGSRINRETSTDSLSITQRGQAGFGHRTSSTWSSQEPHSLDGSNHPKVTSRILGLSESDPTSLSGLSTSMSSSLARTGLQTHMGPSLGGTPSFGSLVNTVSGSSGYFGQQRHRPLGPASPSGQSSMHQHTHSPPSSALRQHQESHNLTEQEHPQTQSISLPGPKTSNLPGQLNQAPHIKITQDSFPIMSQSHFQPGTLRNLQSTRSQSPQHIQTSSPLMPFPQIWHHNPFSQQPLPEPTQSQPLGQTQKPLPQSSIFGTPSTMGHSASGHSNSPDADIPGQSTTGSLLAAIMKSGLLSNNSVTGGFPNLTFQDSGVLPSNLNIQPPLPTGPPPPPQLATSSAPMVTPASVLGPTSHGSTSALTTDPQTTAVLPPLPPGPPPASSLVGSTSSQTSNVASAVPHPLSGLLSSLVAKGLISAPATESPTLIAPQVPSRLQNQSSGLATSISMPVSSNPASSTIPSSSSGNELFSEPAAKSTTTLSQATATEMDLIGVEFKPEIIRELHPSVISGLFDDIPHQCSICGLRLKLQERFDRHLEWHASKKSEPSSSNGVSRRWYASLGDWVAGGLGSLSGPTSTASVEGLVKTAEKSEPLVPADENQSVCVLCGEPFEDSYSHERDEWMYKGAVYMTIPVGEGNVGATDDSAAQGPIVHSNCISPSSVYDLGLAKNAKLDQTDG* 1136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 902 938 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 657 738 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 402 417 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 777 856 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 298 315 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 841 856 - -
Eupl01g01319 1135 SMART 558neu5 82 204 IPR006569 -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 207 272 - -
Eupl01g01319 1135 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 34 756 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 561 629 - -
Eupl01g01319 1135 SUPERFAMILY ENTH/VHS domain 78 206 IPR008942 -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 1 72 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 298 341 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 384 401 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 781 797 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 573 629 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 207 231 - -
Eupl01g01319 1135 CDD CID_Pcf11 84 193 IPR047415 -
Eupl01g01319 1135 ProSitePatterns Zinc finger C2H2 type domain signature. 977 997 IPR013087 -
Eupl01g01319 1135 Pfam CID domain 88 196 IPR006569 -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 464 505 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 434 463 - -
Eupl01g01319 1135 Gene3D - 73 204 IPR008942 -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 236 250 - -
Eupl01g01319 1135 ProSiteProfiles CID domain profile. 79 207 IPR006569 -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 798 826 - -
Eupl01g01319 1135 ProSiteProfiles Zinc finger C2H2 type domain profile. 975 1002 IPR013087 -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 1 45 - -
Eupl01g01319 1135 MobiDBLite consensus disorder prediction 384 505 - -
Eupl01g01319 1135 FunFam polyadenylation and cleavage factor homolog 4 76 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01319 Eupl-Chr1 33318462 33331749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01319 59 421 C2H2 Transcription Factor Family AT4G04885 38.298 1.78e-53 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01319 K14400 - nnu:104587695 1298.11