Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01300 ATGGAGATGGGGGACCAGTACAGCCTGCCAGATCTACGGCAGTTGATAGCCGGAAGAACCTATTTTCCGGCCATCCCACAAGTTGCAGAACAGTTTTCCGGCCAGCAGAATCTGACAACCCGGCAGCATTCCGAGATGATGATGGTGGGTCATCAAGCAGGTGAGGTATCTCCTCGTGGGGTGGTGGAATTTTGTGGGTTGGAAATGGAAGGTGGTATTGGAGGTGATGGAGGGAATGGTAGGTGGCCCAGACAAGAGACTCTCACCCTTCTCGAGATCAGATCACGTCTTGATCCCAAGTTCAAGGAAGCTAATCAGAAAGGGCCCTTGTGGGATGAAGTATCTAGAATAATGGCAGTGGAACACGGATTTCAAAGGAGTGGGAAGAAATGTAGAGAGAAGTTTGAAAACTTGTACAAGTACTATAAGAAGACAAAGGAAGGGAAGGGTAGTAGACAAGATGGGAAGCACTATAGGTTCTTTCGTCAACTTGAAGCTCTTTATGGAGAAACTAGCAATCCACTCTCAGTCTCAGAAAATAATCTGCGATTTCAAACCACAACCAACACTGATATGAAAGCTCAGAAGTTCAGTGAGAGCCTTAGCCTCTCCAATTCCTCCGACTTCAACACTTCGTCGTCCTCCGAAGACAACAACAACAACAACTATCTTACAGCTATAGCATTCATGGAGAAGGATTCGATGGAAAAGAAGAAAATGAAAGATGGTGAAGGTCTTAAAAGGGGTCGAAAGAGCTGGAAATCAAAGATAAGAGACATGGTTGACTCACAGATGAAGAAGTTAATGGAAATGCAAGAGGCCTGGTTTGAGAGGTTGTTGAAGACTCTAGAACACAAAGAACAGGAGAGGATGTCAAGAGAAGCAGAATGGAGGAAGCAAGAAGCTGCCTGGCTCGATCGAGAACATAAATATTGGGCTAATGAGCGTGCTTCAGTCAAAGCTCGTGATGCTGCGTTAATGGAGGCCTTGCAGAAATTTACAGGGAGAAAACTGAACGATTTGTCTCCCGACGAGAACGAGAATGGATATGAAACACTCGATAGCACTGTTAACACTAATAGCTGGCCAGAATCTGAGATCTCAAGTCTAATACAACTGCGAACCAGTATGGAACCAAGATTTGAACCAAGTGGGTGTTCAAAGGGGGGGCTGTGGGAGGAGATTTCAGTGAAGATGGCTTGTTTGGGGTACGATCTGAGTGCAAAGAAGTGCAAAGAGACTTGGGAAAACGTCAAGTATTTGAGAAAAACCAACGAGTGTAACAAGAAACGTAAAGAGAATTCAAGAACATGTCTTGATTCCATATACAACCAAGAAGGGGATTTCTGTGGGCATGACATTGATAATCATCAAGGGCCGCCTGATATGGTGGGACTTCAAACGAACGAGAACTGCTTTCGCTTTCTGATGAGTGAAGGGGAGAACTTGTGGGAGAATTATGGTGTGAAGACAAACAAAGGGGAGAAGTAA 1491 0.4494 MEMGDQYSLPDLRQLIAGRTYFPAIPQVAEQFSGQQNLTTRQHSEMMMVGHQAGEVSPRGVVEFCGLEMEGGIGGDGGNGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMAVEHGFQRSGKKCREKFENLYKYYKKTKEGKGSRQDGKHYRFFRQLEALYGETSNPLSVSENNLRFQTTTNTDMKAQKFSESLSLSNSSDFNTSSSSEDNNNNNYLTAIAFMEKDSMEKKKMKDGEGLKRGRKSWKSKIRDMVDSQMKKLMEMQEAWFERLLKTLEHKEQERMSREAEWRKQEAAWLDREHKYWANERASVKARDAALMEALQKFTGRKLNDLSPDENENGYETLDSTVNTNSWPESEISSLIQLRTSMEPRFEPSGCSKGGLWEEISVKMACLGYDLSAKKCKETWENVKYLRKTNECNKKRKENSRTCLDSIYNQEGDFCGHDIDNHQGPPDMVGLQTNENCFRFLMSEGENLWENYGVKTNKGEK* 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01300 496 CDD GT1 360 425 - -
Eupl01g01300 496 ProSiteProfiles Myb-like domain profile. 80 139 IPR001005 -
Eupl01g01300 496 SMART sant 78 141 IPR001005 -
Eupl01g01300 496 SMART sant 358 421 IPR001005 -
Eupl01g01300 496 Pfam Myb/SANT-like DNA-binding domain 360 433 IPR044822 -
Eupl01g01300 496 Pfam Myb/SANT-like DNA-binding domain 81 167 IPR044822 -
Eupl01g01300 496 FunFam Trihelix transcription factor GT-2 362 423 - -
Eupl01g01300 496 ProSiteProfiles Myb-like domain profile. 354 419 IPR001005 -
Eupl01g01300 496 FunFam trihelix transcription factor PTL-like 82 144 - -
Eupl01g01300 496 Gene3D - 362 424 - -
Eupl01g01300 496 Gene3D - 82 144 - -
Eupl01g01300 496 PANTHER FI21293P1 38 490 - -
Eupl01g01300 496 CDD GT1 81 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01300 Eupl-Chr1 33119926 33121984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01300 81 495 Trihelix Transcription Factor Family AT5G03680 44.332 5.16e-115 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Eupl01g01300 Myb_DNA-bind_4 4.1e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01300 - - nnu:104612483 624.009