Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g01298 ATGATTGATTCTGGCATTAACTTGGTGATGACAGTTATTGGATTCGCAGTAAGTACGATGTTCATCGTATTCGTCTGCACGAGGCTTGTTTGTGCCAGGATCCAATTGAACGCTTCCAGACGATCCTTCCCAACAGCTTCTAGATCCGACCTTGGCTTTCTGGAACGTGGGCTTCATGGCCTGGAGCCTGTTGTTGTAGCTACCTTTCCTACAAAGAAATATAGCGATGAGTTTTTCTCATCTAGAGAAGATTCCCAGTGTATGGTGTGCCTCTCGGAATACCAAGAGAAAGACATACTGCGTATCCTGCCCTACTGTGGGCATTTCTTCCATGTCACCTGCATAGATATATGGCTGCAGCAGCATTCCACATGTCCTGTTTGTCGGATTTCATTGCGAAATTCCCTCCACTCACATTCATTTCGCTGTTTGTATAGTGGTCATGGATATTCCTCAAGAGGCATTGACAACCGAAGGATGGAATCCATTCAGGAGGATCAGTTTGCATCAGAGCCTGATGCAGCAGAAGCCGGAGAGAGCATCTCCTCCTTGACAGAGGGTAATCATGTCCCAAAAGAAACTGGCCTCCATGAACCGGGAAACAAGCATATTGAGAGTCCATCCAATCCATAG 633 0.4645 MIDSGINLVMTVIGFAVSTMFIVFVCTRLVCARIQLNASRRSFPTASRSDLGFLERGLHGLEPVVVATFPTKKYSDEFFSSREDSQCMVCLSEYQEKDILRILPYCGHFFHVTCIDIWLQQHSTCPVCRISLRNSLHSHSFRCLYSGHGYSSRGIDNRRMESIQEDQFASEPDAAEAGESISSLTEGNHVPKETGLHEPGNKHIESPSNP* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g01298 210 CDD RING-H2_EL5-like 86 129 - -
Eupl01g01298 210 SMART ring_2 87 128 IPR001841 -
Eupl01g01298 210 MobiDBLite consensus disorder prediction 165 210 - -
Eupl01g01298 210 FunFam E3 ubiquitin-protein ligase ATL6 52 135 - -
Eupl01g01298 210 Pfam Ring finger domain 86 129 IPR001841 -
Eupl01g01298 210 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
Eupl01g01298 210 PANTHER OS11G0150450 PROTEIN 1 143 - -
Eupl01g01298 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 135 IPR013083 -
Eupl01g01298 210 SUPERFAMILY RING/U-box 81 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g01298 Eupl-Chr1 33080141 33086490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g01298 47 194 C3H Transcription Factor Family AT4G10150 36.709 6.33e-20 82.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g01298 - - nnu:104586939 328.561